Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 AC244015.2-201ENST00000616358 1861 ntBASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM39Q9HCM9 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 DUX4L16-201ENST00000555130 1264 ntBASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 AC010536.3-201ENST00000620306 533 ntBASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 AC073111.5-205ENST00000641717 521 ntBASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM39Q9HCM9 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 CDCA4P2-201ENST00000441182 718 ntBASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM39Q9HCM9 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
TRIM39Q9HCM9 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM39Q9HCM9 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 TERF1P5-201ENST00000477545 1207 ntBASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 AC090192.1-201ENST00000517740 490 ntBASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM39Q9HCM9 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 AC026185.1-201ENST00000445748 174 ntBASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM39Q9HCM9 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms