Protein–RNA interactions for Protein: Q9H9Y6

POLR1B, DNA-directed RNA polymerase I subunit RPA2, humanhuman

Predictions only

Length 1,135 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR1BQ9H9Y6 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
POLR1BQ9H9Y6 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
POLR1BQ9H9Y6 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.6■□□□□ 0.89
POLR1BQ9H9Y6 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
POLR1BQ9H9Y6 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.6■□□□□ 0.89
POLR1BQ9H9Y6 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
POLR1BQ9H9Y6 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
POLR1BQ9H9Y6 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
POLR1BQ9H9Y6 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
POLR1BQ9H9Y6 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
POLR1BQ9H9Y6 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR1BQ9H9Y6 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR1BQ9H9Y6 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
POLR1BQ9H9Y6 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.59■□□□□ 0.89
POLR1BQ9H9Y6 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.59■□□□□ 0.89
POLR1BQ9H9Y6 AC073210.2-201ENST00000430369 194 ntBASIC20.59■□□□□ 0.89
POLR1BQ9H9Y6 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
POLR1BQ9H9Y6 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
POLR1BQ9H9Y6 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
POLR1BQ9H9Y6 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
POLR1BQ9H9Y6 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
POLR1BQ9H9Y6 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
POLR1BQ9H9Y6 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
POLR1BQ9H9Y6 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
POLR1BQ9H9Y6 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 AC133552.2-202ENST00000575694 574 ntBASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 AC092053.2-201ENST00000640557 1818 ntBASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
POLR1BQ9H9Y6 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 AC105036.2-201ENST00000569468 176 ntBASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
POLR1BQ9H9Y6 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
POLR1BQ9H9Y6 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
POLR1BQ9H9Y6 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
POLR1BQ9H9Y6 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.55■□□□□ 0.88
POLR1BQ9H9Y6 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.55■□□□□ 0.88
POLR1BQ9H9Y6 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.55■□□□□ 0.88
POLR1BQ9H9Y6 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.55■□□□□ 0.88
POLR1BQ9H9Y6 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
POLR1BQ9H9Y6 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
POLR1BQ9H9Y6 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.55■□□□□ 0.88
POLR1BQ9H9Y6 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.55■□□□□ 0.88
POLR1BQ9H9Y6 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 AC026310.3-201ENST00000625186 2373 ntBASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 AC139530.1-201ENST00000575312 1977 ntBASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 CNN2P6-201ENST00000439038 900 ntBASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
POLR1BQ9H9Y6 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms