Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp11Q99K46 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp11Q99K46 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Usp11Q99K46 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp11Q99K46 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp11Q99K46 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp11Q99K46 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp11Q99K46 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp11Q99K46 Gm42569-201ENSMUST00000200539 472 ntBASIC19.27■□□□□ 0.68
Usp11Q99K46 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC19.27■□□□□ 0.68
Usp11Q99K46 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.27■□□□□ 0.68
Usp11Q99K46 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Usp11Q99K46 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Usp11Q99K46 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp11Q99K46 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp11Q99K46 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp11Q99K46 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp11Q99K46 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp11Q99K46 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp11Q99K46 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp11Q99K46 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp11Q99K46 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Usp11Q99K46 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp11Q99K46 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp11Q99K46 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp11Q99K46 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp11Q99K46 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp11Q99K46 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp11Q99K46 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp11Q99K46 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp11Q99K46 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp11Q99K46 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.25■□□□□ 0.67
Usp11Q99K46 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Usp11Q99K46 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.25■□□□□ 0.67
Usp11Q99K46 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp11Q99K46 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp11Q99K46 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp11Q99K46 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp11Q99K46 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Usp11Q99K46 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp11Q99K46 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp11Q99K46 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp11Q99K46 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp11Q99K46 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp11Q99K46 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp11Q99K46 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp11Q99K46 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Usp11Q99K46 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp11Q99K46 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Usp11Q99K46 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Usp11Q99K46 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp11Q99K46 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp11Q99K46 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.24■□□□□ 0.67
Usp11Q99K46 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp11Q99K46 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp11Q99K46 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp11Q99K46 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp11Q99K46 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.23■□□□□ 0.67
Usp11Q99K46 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC19.23■□□□□ 0.67
Usp11Q99K46 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.23■□□□□ 0.67
Usp11Q99K46 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp11Q99K46 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp11Q99K46 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp11Q99K46 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp11Q99K46 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp11Q99K46 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp11Q99K46 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Usp11Q99K46 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp11Q99K46 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Usp11Q99K46 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.22■□□□□ 0.67
Usp11Q99K46 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp11Q99K46 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp11Q99K46 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Usp11Q99K46 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.22■□□□□ 0.67
Usp11Q99K46 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.22■□□□□ 0.67
Usp11Q99K46 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.22■□□□□ 0.67
Usp11Q99K46 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp11Q99K46 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp11Q99K46 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp11Q99K46 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp11Q99K46 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp11Q99K46 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp11Q99K46 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp11Q99K46 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp11Q99K46 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp11Q99K46 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp11Q99K46 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Usp11Q99K46 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp11Q99K46 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Usp11Q99K46 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Usp11Q99K46 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Usp11Q99K46 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp11Q99K46 Gm27405-201ENSMUST00000184201 112 ntBASIC19.21■□□□□ 0.67
Usp11Q99K46 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC19.21■□□□□ 0.67
Usp11Q99K46 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp11Q99K46 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Usp11Q99K46 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp11Q99K46 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp11Q99K46 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp11Q99K46 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms