Protein–RNA interactions for Protein: Q4FZC9

Syne3, Nesprin-3, mousemouse

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne3Q4FZC9 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Syne3Q4FZC9 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Syne3Q4FZC9 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Syne3Q4FZC9 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Syne3Q4FZC9 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
Syne3Q4FZC9 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Syne3Q4FZC9 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Gm45606-201ENSMUST00000209836 2795 ntBASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Gm6420-201ENSMUST00000193885 723 ntBASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Gm10655-201ENSMUST00000098658 1397 ntBASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Syne3Q4FZC9 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Gm42939-201ENSMUST00000197514 2205 ntBASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Syne3Q4FZC9 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Syne3Q4FZC9 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Syne3Q4FZC9 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.7
Syne3Q4FZC9 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Syne3Q4FZC9 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Syne3Q4FZC9 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Syne3Q4FZC9 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms