Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CPSF4O95639 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CPSF4O95639 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CPSF4O95639 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CPSF4O95639 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.87■□□□□ 0.77
CPSF4O95639 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.87■□□□□ 0.77
CPSF4O95639 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CPSF4O95639 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.87■□□□□ 0.77
CPSF4O95639 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CPSF4O95639 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CPSF4O95639 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CPSF4O95639 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.87■□□□□ 0.77
CPSF4O95639 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.87■□□□□ 0.77
CPSF4O95639 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CPSF4O95639 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CPSF4O95639 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.86■□□□□ 0.77
CPSF4O95639 SLC25A24-204ENST00000569674 2357 ntBASIC19.86■□□□□ 0.77
CPSF4O95639 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CPSF4O95639 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.86■□□□□ 0.77
CPSF4O95639 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CPSF4O95639 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CPSF4O95639 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CPSF4O95639 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.86■□□□□ 0.77
CPSF4O95639 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.86■□□□□ 0.77
CPSF4O95639 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.86■□□□□ 0.77
CPSF4O95639 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CPSF4O95639 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CPSF4O95639 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
CPSF4O95639 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
CPSF4O95639 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CPSF4O95639 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CPSF4O95639 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.86■□□□□ 0.77
CPSF4O95639 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CPSF4O95639 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.85■□□□□ 0.77
CPSF4O95639 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CPSF4O95639 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CPSF4O95639 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CPSF4O95639 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.85■□□□□ 0.77
CPSF4O95639 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.85■□□□□ 0.77
CPSF4O95639 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.85■□□□□ 0.77
CPSF4O95639 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.85■□□□□ 0.77
CPSF4O95639 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.85■□□□□ 0.77
CPSF4O95639 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CPSF4O95639 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CPSF4O95639 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CPSF4O95639 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CPSF4O95639 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CPSF4O95639 AC055733.4-201ENST00000638462 1354 ntBASIC19.84■□□□□ 0.77
CPSF4O95639 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
CPSF4O95639 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CPSF4O95639 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.84■□□□□ 0.77
CPSF4O95639 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CPSF4O95639 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.84■□□□□ 0.77
CPSF4O95639 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CPSF4O95639 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.84■□□□□ 0.77
CPSF4O95639 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.84■□□□□ 0.77
CPSF4O95639 AC027682.1-201ENST00000562846 899 ntBASIC19.84■□□□□ 0.77
CPSF4O95639 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CPSF4O95639 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CPSF4O95639 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.84■□□□□ 0.77
CPSF4O95639 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CPSF4O95639 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CPSF4O95639 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CPSF4O95639 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
CPSF4O95639 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CPSF4O95639 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.84■□□□□ 0.77
CPSF4O95639 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CPSF4O95639 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.84■□□□□ 0.77
CPSF4O95639 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CPSF4O95639 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CPSF4O95639 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CPSF4O95639 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CPSF4O95639 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CPSF4O95639 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CPSF4O95639 AC106739.1-201ENST00000617035 715 ntBASIC19.83■□□□□ 0.77
CPSF4O95639 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CPSF4O95639 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CPSF4O95639 AC005224.4-201ENST00000583262 1652 ntBASIC19.83■□□□□ 0.76
CPSF4O95639 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CPSF4O95639 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CPSF4O95639 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CPSF4O95639 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CPSF4O95639 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CPSF4O95639 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.83■□□□□ 0.76
CPSF4O95639 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CPSF4O95639 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CPSF4O95639 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CPSF4O95639 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.82■□□□□ 0.76
CPSF4O95639 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.82■□□□□ 0.76
CPSF4O95639 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.82■□□□□ 0.76
CPSF4O95639 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.82■□□□□ 0.76
CPSF4O95639 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CPSF4O95639 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CPSF4O95639 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.82■□□□□ 0.76
CPSF4O95639 LINC01006-201ENST00000333319 2292 ntBASIC19.82■□□□□ 0.76
CPSF4O95639 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
CPSF4O95639 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.81■□□□□ 0.76
CPSF4O95639 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CPSF4O95639 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms