Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Pcdhgb8A0A140LI48 Gm18671-201ENSMUST00000214826 683 ntBASIC16.53■□□□□ 0.24
Pcdhgb8A0A140LI48 AC164629.5-201ENSMUST00000220387 632 ntBASIC16.53■□□□□ 0.24
Pcdhgb8A0A140LI48 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pcdhgb8A0A140LI48 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pcdhgb8A0A140LI48 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Pcdhgb8A0A140LI48 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pcdhgb8A0A140LI48 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pcdhgb8A0A140LI48 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pcdhgb8A0A140LI48 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pcdhgb8A0A140LI48 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pcdhgb8A0A140LI48 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Pcdhgb8A0A140LI48 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Pcdhgb8A0A140LI48 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pcdhgb8A0A140LI48 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pcdhgb8A0A140LI48 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Pcdhgb8A0A140LI48 Gm7291-201ENSMUST00000199147 382 ntBASIC16.52■□□□□ 0.24
Pcdhgb8A0A140LI48 Gm42778-201ENSMUST00000199644 553 ntBASIC16.52■□□□□ 0.24
Pcdhgb8A0A140LI48 Gm42569-201ENSMUST00000200539 472 ntBASIC16.52■□□□□ 0.24
Pcdhgb8A0A140LI48 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pcdhgb8A0A140LI48 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Pcdhgb8A0A140LI48 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Pcdhgb8A0A140LI48 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC16.51■□□□□ 0.23
Pcdhgb8A0A140LI48 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Pcdhgb8A0A140LI48 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Pcdhgb8A0A140LI48 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Pcdhgb8A0A140LI48 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC16.51■□□□□ 0.23
Pcdhgb8A0A140LI48 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC16.51■□□□□ 0.23
Pcdhgb8A0A140LI48 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Gm10033-202ENSMUST00000211874 928 ntBASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Pcdhgb8A0A140LI48 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Gm26571-201ENSMUST00000181399 666 ntBASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Pcdhgb8A0A140LI48 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 AC154231.1-201ENSMUST00000220564 2175 ntBASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Pcdhgb8A0A140LI48 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC16.47■□□□□ 0.23
Pcdhgb8A0A140LI48 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Pcdhgb8A0A140LI48 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms