Protein–RNA interactions for Protein: Q8BXJ2

Trerf1, Transcriptional-regulating factor 1, mousemouse

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trerf1Q8BXJ2 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trerf1Q8BXJ2 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trerf1Q8BXJ2 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trerf1Q8BXJ2 Gm13146-201ENSMUST00000118508 780 ntBASIC19.27■□□□□ 0.68
Trerf1Q8BXJ2 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trerf1Q8BXJ2 Gm45606-201ENSMUST00000209836 2795 ntBASIC19.27■□□□□ 0.68
Trerf1Q8BXJ2 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trerf1Q8BXJ2 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Trerf1Q8BXJ2 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Trerf1Q8BXJ2 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trerf1Q8BXJ2 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Trerf1Q8BXJ2 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trerf1Q8BXJ2 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trerf1Q8BXJ2 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Trerf1Q8BXJ2 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Gm37179-201ENSMUST00000194862 823 ntBASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trerf1Q8BXJ2 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trerf1Q8BXJ2 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trerf1Q8BXJ2 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Trerf1Q8BXJ2 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trerf1Q8BXJ2 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trerf1Q8BXJ2 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Trerf1Q8BXJ2 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trerf1Q8BXJ2 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC19.23■□□□□ 0.67
Trerf1Q8BXJ2 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trerf1Q8BXJ2 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trerf1Q8BXJ2 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trerf1Q8BXJ2 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trerf1Q8BXJ2 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trerf1Q8BXJ2 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Ap3s1-204ENSMUST00000225520 957 ntBASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trerf1Q8BXJ2 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms