Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
Trim56Q80VI1 Gm6627-201ENSMUST00000218299 2386 ntBASIC21.79■■□□□ 1.08
Trim56Q80VI1 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim56Q80VI1 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim56Q80VI1 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim56Q80VI1 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC21.79■■□□□ 1.08
Trim56Q80VI1 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim56Q80VI1 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim56Q80VI1 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Gm10653-202ENSMUST00000139570 835 ntBASIC21.78■■□□□ 1.08
Trim56Q80VI1 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim56Q80VI1 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim56Q80VI1 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
Trim56Q80VI1 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trim56Q80VI1 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim56Q80VI1 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trim56Q80VI1 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Trim56Q80VI1 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trim56Q80VI1 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Trim56Q80VI1 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim56Q80VI1 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trim56Q80VI1 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim56Q80VI1 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim56Q80VI1 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC21.76■■□□□ 1.07
Trim56Q80VI1 Gm22325-201ENSMUST00000158904 308 ntBASIC21.76■■□□□ 1.07
Trim56Q80VI1 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim56Q80VI1 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim56Q80VI1 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim56Q80VI1 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim56Q80VI1 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim56Q80VI1 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim56Q80VI1 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim56Q80VI1 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Trim56Q80VI1 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim56Q80VI1 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim56Q80VI1 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC21.75■■□□□ 1.07
Trim56Q80VI1 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Trim56Q80VI1 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim56Q80VI1 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim56Q80VI1 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim56Q80VI1 Gm45906-201ENSMUST00000208911 1430 ntBASIC21.73■■□□□ 1.07
Trim56Q80VI1 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim56Q80VI1 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim56Q80VI1 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trim56Q80VI1 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trim56Q80VI1 Gm27275-201ENSMUST00000184318 272 ntBASIC21.73■■□□□ 1.07
Trim56Q80VI1 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim56Q80VI1 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim56Q80VI1 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Trim56Q80VI1 Gm12896-201ENSMUST00000118430 226 ntBASIC21.72■■□□□ 1.07
Trim56Q80VI1 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Trim56Q80VI1 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC21.72■■□□□ 1.07
Trim56Q80VI1 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC21.72■■□□□ 1.07
Trim56Q80VI1 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC21.72■■□□□ 1.07
Trim56Q80VI1 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim56Q80VI1 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim56Q80VI1 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim56Q80VI1 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim56Q80VI1 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trim56Q80VI1 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Trim56Q80VI1 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Gm37856-201ENSMUST00000191634 999 ntBASIC21.71■■□□□ 1.07
Trim56Q80VI1 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim56Q80VI1 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim56Q80VI1 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms