Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Pcdha4O88689 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Pcdha4O88689 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Pcdha4O88689 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdha4O88689 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdha4O88689 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Pcdha4O88689 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdha4O88689 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.57■□□□□ 0.88
Pcdha4O88689 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdha4O88689 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdha4O88689 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC20.57■□□□□ 0.88
Pcdha4O88689 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdha4O88689 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdha4O88689 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC20.57■□□□□ 0.88
Pcdha4O88689 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Pcdha4O88689 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdha4O88689 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pcdha4O88689 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdha4O88689 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdha4O88689 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdha4O88689 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Pcdha4O88689 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdha4O88689 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Pcdha4O88689 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.56■□□□□ 0.88
Pcdha4O88689 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.56■□□□□ 0.88
Pcdha4O88689 AC140264.2-202ENSMUST00000218746 817 ntBASIC20.56■□□□□ 0.88
Pcdha4O88689 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdha4O88689 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdha4O88689 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Pcdha4O88689 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdha4O88689 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdha4O88689 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdha4O88689 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pcdha4O88689 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pcdha4O88689 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pcdha4O88689 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Pcdha4O88689 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC20.55■□□□□ 0.88
Pcdha4O88689 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.55■□□□□ 0.88
Pcdha4O88689 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
Pcdha4O88689 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pcdha4O88689 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pcdha4O88689 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.55■□□□□ 0.88
Pcdha4O88689 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pcdha4O88689 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pcdha4O88689 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Pcdha4O88689 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Pcdha4O88689 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC20.54■□□□□ 0.88
Pcdha4O88689 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Pcdha4O88689 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.54■□□□□ 0.88
Pcdha4O88689 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.54■□□□□ 0.88
Pcdha4O88689 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Pcdha4O88689 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Pcdha4O88689 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Pcdha4O88689 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Pcdha4O88689 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Pcdha4O88689 Gm9194-201ENSMUST00000220749 1447 ntBASIC20.53■□□□□ 0.88
Pcdha4O88689 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Pcdha4O88689 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Pcdha4O88689 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Pcdha4O88689 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Pcdha4O88689 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Pcdha4O88689 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Pcdha4O88689 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Pcdha4O88689 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Pcdha4O88689 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Pcdha4O88689 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
Pcdha4O88689 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC20.52■□□□□ 0.88
Pcdha4O88689 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Pcdha4O88689 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Pcdha4O88689 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Pcdha4O88689 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Pcdha4O88689 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
Pcdha4O88689 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Pcdha4O88689 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdha4O88689 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdha4O88689 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdha4O88689 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.51■□□□□ 0.87
Pcdha4O88689 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdha4O88689 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC20.51■□□□□ 0.87
Pcdha4O88689 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.51■□□□□ 0.87
Pcdha4O88689 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdha4O88689 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdha4O88689 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdha4O88689 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC20.51■□□□□ 0.87
Pcdha4O88689 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdha4O88689 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdha4O88689 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Pcdha4O88689 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdha4O88689 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdha4O88689 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pcdha4O88689 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Pcdha4O88689 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC20.5■□□□□ 0.87
Pcdha4O88689 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Pcdha4O88689 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC20.5■□□□□ 0.87
Pcdha4O88689 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Pcdha4O88689 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Pcdha4O88689 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Pcdha4O88689 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Pcdha4O88689 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Pcdha4O88689 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms