Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4LA6NMK7 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4LA6NMK7 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CPSF4LA6NMK7 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.32■□□□□ 0.68
CPSF4LA6NMK7 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.32■□□□□ 0.68
CPSF4LA6NMK7 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CPSF4LA6NMK7 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 AC009237.3-201ENST00000393279 1427 ntBASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPSF4LA6NMK7 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 AC106739.1-201ENST00000617035 715 ntBASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.3■□□□□ 0.68
CPSF4LA6NMK7 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 AP001330.3-201ENST00000520123 633 ntBASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CPSF4LA6NMK7 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 AC055733.4-201ENST00000638462 1354 ntBASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CPSF4LA6NMK7 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.27■□□□□ 0.68
CPSF4LA6NMK7 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.27■□□□□ 0.68
CPSF4LA6NMK7 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CPSF4LA6NMK7 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CPSF4LA6NMK7 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.27■□□□□ 0.68
CPSF4LA6NMK7 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.27■□□□□ 0.68
CPSF4LA6NMK7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.27■□□□□ 0.68
CPSF4LA6NMK7 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CPSF4LA6NMK7 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.27■□□□□ 0.68
CPSF4LA6NMK7 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.27■□□□□ 0.67
CPSF4LA6NMK7 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.27■□□□□ 0.67
CPSF4LA6NMK7 AC005224.4-201ENST00000583262 1652 ntBASIC19.27■□□□□ 0.67
CPSF4LA6NMK7 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms