Protein–RNA interactions for Protein: Q9EQH3

Vps35, Vacuolar protein sorting-associated protein 35, mousemouse

Known RBP Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps35Q9EQH3 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
Vps35Q9EQH3 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.55
Vps35Q9EQH3 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
Vps35Q9EQH3 Gm45855-201ENSMUST00000212546 880 ntBASIC24.69■■□□□ 1.54
Vps35Q9EQH3 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Vps35Q9EQH3 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC24.68■■□□□ 1.54
Vps35Q9EQH3 Gm43445-201ENSMUST00000198564 2091 ntBASIC24.68■■□□□ 1.54
Vps35Q9EQH3 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Vps35Q9EQH3 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Vps35Q9EQH3 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Vps35Q9EQH3 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
Vps35Q9EQH3 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Vps35Q9EQH3 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Vps35Q9EQH3 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
Vps35Q9EQH3 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Vps35Q9EQH3 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Vps35Q9EQH3 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Vps35Q9EQH3 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC24.63■■□□□ 1.53
Vps35Q9EQH3 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Vps35Q9EQH3 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Vps35Q9EQH3 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
Vps35Q9EQH3 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Vps35Q9EQH3 Gm24970-201ENSMUST00000175582 82 ntBASIC24.62■■□□□ 1.53
Vps35Q9EQH3 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC24.61■■□□□ 1.53
Vps35Q9EQH3 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC24.61■■□□□ 1.53
Vps35Q9EQH3 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Vps35Q9EQH3 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Vps35Q9EQH3 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Vps35Q9EQH3 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
Vps35Q9EQH3 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC24.6■■□□□ 1.53
Vps35Q9EQH3 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Vps35Q9EQH3 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Vps35Q9EQH3 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
Vps35Q9EQH3 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Vps35Q9EQH3 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Vps35Q9EQH3 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Vps35Q9EQH3 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Vps35Q9EQH3 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Vps35Q9EQH3 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
Vps35Q9EQH3 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC24.55■■□□□ 1.52
Vps35Q9EQH3 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Vps35Q9EQH3 Gm43863-201ENSMUST00000203822 1192 ntBASIC24.54■■□□□ 1.52
Vps35Q9EQH3 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Vps35Q9EQH3 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Vps35Q9EQH3 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Vps35Q9EQH3 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Vps35Q9EQH3 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Vps35Q9EQH3 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Vps35Q9EQH3 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Vps35Q9EQH3 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Vps35Q9EQH3 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Vps35Q9EQH3 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC24.49■■□□□ 1.51
Vps35Q9EQH3 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Vps35Q9EQH3 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
Vps35Q9EQH3 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC24.48■■□□□ 1.51
Vps35Q9EQH3 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Vps35Q9EQH3 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC24.47■■□□□ 1.51
Vps35Q9EQH3 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Vps35Q9EQH3 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
Vps35Q9EQH3 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Vps35Q9EQH3 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC24.45■■□□□ 1.5
Vps35Q9EQH3 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC24.45■■□□□ 1.5
Vps35Q9EQH3 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
Vps35Q9EQH3 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Vps35Q9EQH3 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Vps35Q9EQH3 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Vps35Q9EQH3 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC24.43■■□□□ 1.5
Vps35Q9EQH3 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Vps35Q9EQH3 AC157572.2-201ENSMUST00000226970 908 ntBASIC24.42■■□□□ 1.5
Vps35Q9EQH3 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Vps35Q9EQH3 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Vps35Q9EQH3 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC24.4■■□□□ 1.5
Vps35Q9EQH3 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Vps35Q9EQH3 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC24.39■■□□□ 1.49
Vps35Q9EQH3 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Vps35Q9EQH3 Amer2-203ENSMUST00000225247 2662 ntBASIC24.39■■□□□ 1.49
Vps35Q9EQH3 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Vps35Q9EQH3 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Vps35Q9EQH3 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC24.38■■□□□ 1.49
Vps35Q9EQH3 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
Vps35Q9EQH3 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC24.38■■□□□ 1.49
Vps35Q9EQH3 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Vps35Q9EQH3 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
Vps35Q9EQH3 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Vps35Q9EQH3 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Vps35Q9EQH3 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Vps35Q9EQH3 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Vps35Q9EQH3 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC24.36■■□□□ 1.49
Vps35Q9EQH3 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Vps35Q9EQH3 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Vps35Q9EQH3 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Vps35Q9EQH3 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Vps35Q9EQH3 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Vps35Q9EQH3 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Vps35Q9EQH3 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Vps35Q9EQH3 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC24.31■■□□□ 1.48
Vps35Q9EQH3 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Vps35Q9EQH3 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC24.3■■□□□ 1.48
Vps35Q9EQH3 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Vps35Q9EQH3 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC24.28■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms