Protein–RNA interactions for Protein: P61025

Cks1b, Cyclin-dependent kinases regulatory subunit 1, mousemouse

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cks1bP61025 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cks1bP61025 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cks1bP61025 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Cks1bP61025 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
Cks1bP61025 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cks1bP61025 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cks1bP61025 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cks1bP61025 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cks1bP61025 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cks1bP61025 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cks1bP61025 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cks1bP61025 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Cks1bP61025 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cks1bP61025 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cks1bP61025 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cks1bP61025 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Cks1bP61025 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cks1bP61025 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC17.22■□□□□ 0.35
Cks1bP61025 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cks1bP61025 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC17.22■□□□□ 0.35
Cks1bP61025 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cks1bP61025 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Cks1bP61025 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cks1bP61025 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cks1bP61025 AC122428.3-201ENSMUST00000215551 2290 ntBASIC17.21■□□□□ 0.34
Cks1bP61025 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cks1bP61025 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
Cks1bP61025 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC17.2■□□□□ 0.34
Cks1bP61025 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cks1bP61025 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cks1bP61025 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cks1bP61025 AC153890.1-201ENSMUST00000220021 2469 ntBASIC17.19■□□□□ 0.34
Cks1bP61025 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cks1bP61025 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cks1bP61025 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cks1bP61025 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC17.18■□□□□ 0.34
Cks1bP61025 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cks1bP61025 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cks1bP61025 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cks1bP61025 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cks1bP61025 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cks1bP61025 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cks1bP61025 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cks1bP61025 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Cks1bP61025 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cks1bP61025 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cks1bP61025 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cks1bP61025 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cks1bP61025 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC17.16■□□□□ 0.34
Cks1bP61025 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cks1bP61025 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cks1bP61025 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cks1bP61025 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cks1bP61025 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cks1bP61025 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cks1bP61025 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Cks1bP61025 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cks1bP61025 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cks1bP61025 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cks1bP61025 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cks1bP61025 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cks1bP61025 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cks1bP61025 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cks1bP61025 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cks1bP61025 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cks1bP61025 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cks1bP61025 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cks1bP61025 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cks1bP61025 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cks1bP61025 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Cks1bP61025 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cks1bP61025 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cks1bP61025 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Cks1bP61025 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cks1bP61025 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cks1bP61025 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cks1bP61025 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cks1bP61025 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cks1bP61025 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Cks1bP61025 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cks1bP61025 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cks1bP61025 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cks1bP61025 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cks1bP61025 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC17.05■□□□□ 0.32
Cks1bP61025 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cks1bP61025 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cks1bP61025 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cks1bP61025 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cks1bP61025 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
Cks1bP61025 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Cks1bP61025 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cks1bP61025 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Cks1bP61025 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cks1bP61025 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
Cks1bP61025 Gm25262-201ENSMUST00000174934 133 ntBASIC17.03■□□□□ 0.32
Cks1bP61025 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cks1bP61025 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Cks1bP61025 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cks1bP61025 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC17.03■□□□□ 0.32
Cks1bP61025 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms