Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Shmt1P50431 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Shmt1P50431 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
Shmt1P50431 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC26.6■■□□□ 1.85
Shmt1P50431 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Shmt1P50431 Gm6345-201ENSMUST00000180378 1691 ntBASIC26.58■■□□□ 1.85
Shmt1P50431 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Shmt1P50431 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC26.58■■□□□ 1.85
Shmt1P50431 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Shmt1P50431 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Shmt1P50431 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC26.56■■□□□ 1.84
Shmt1P50431 Gm43863-201ENSMUST00000203822 1192 ntBASIC26.56■■□□□ 1.84
Shmt1P50431 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Shmt1P50431 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Shmt1P50431 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Shmt1P50431 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Shmt1P50431 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Shmt1P50431 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC26.54■■□□□ 1.84
Shmt1P50431 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
Shmt1P50431 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Shmt1P50431 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
Shmt1P50431 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Shmt1P50431 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Shmt1P50431 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
Shmt1P50431 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
Shmt1P50431 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Shmt1P50431 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC26.48■■□□□ 1.83
Shmt1P50431 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Shmt1P50431 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Shmt1P50431 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Shmt1P50431 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC26.47■■□□□ 1.83
Shmt1P50431 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Shmt1P50431 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
Shmt1P50431 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Shmt1P50431 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
Shmt1P50431 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC26.45■■□□□ 1.82
Shmt1P50431 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC26.44■■□□□ 1.82
Shmt1P50431 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Shmt1P50431 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Shmt1P50431 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Shmt1P50431 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Shmt1P50431 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Shmt1P50431 AC157572.2-201ENSMUST00000226970 908 ntBASIC26.39■■□□□ 1.82
Shmt1P50431 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Shmt1P50431 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Shmt1P50431 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Shmt1P50431 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC26.38■■□□□ 1.81
Shmt1P50431 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Shmt1P50431 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Shmt1P50431 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Shmt1P50431 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Shmt1P50431 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Shmt1P50431 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Shmt1P50431 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Shmt1P50431 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC26.34■■□□□ 1.81
Shmt1P50431 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Shmt1P50431 Zxda-201ENSMUST00000117281 2621 ntBASIC26.31■■□□□ 1.8
Shmt1P50431 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC26.3■■□□□ 1.8
Shmt1P50431 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC26.3■■□□□ 1.8
Shmt1P50431 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
Shmt1P50431 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Shmt1P50431 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Shmt1P50431 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC26.25■■□□□ 1.79
Shmt1P50431 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Shmt1P50431 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC26.24■■□□□ 1.79
Shmt1P50431 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Shmt1P50431 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Shmt1P50431 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC26.22■■□□□ 1.79
Shmt1P50431 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC26.21■■□□□ 1.79
Shmt1P50431 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Shmt1P50431 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Shmt1P50431 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Shmt1P50431 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
Shmt1P50431 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
Shmt1P50431 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
Shmt1P50431 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC26.18■■□□□ 1.78
Shmt1P50431 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Shmt1P50431 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Shmt1P50431 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Shmt1P50431 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Shmt1P50431 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Shmt1P50431 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Shmt1P50431 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Shmt1P50431 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC26.15■■□□□ 1.78
Shmt1P50431 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Shmt1P50431 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Shmt1P50431 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
Shmt1P50431 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.14■■□□□ 1.77
Shmt1P50431 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC26.12■■□□□ 1.77
Shmt1P50431 Gm6206-201ENSMUST00000133472 2199 ntBASIC26.11■■□□□ 1.77
Shmt1P50431 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Shmt1P50431 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Shmt1P50431 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
Shmt1P50431 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Shmt1P50431 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC26.08■■□□□ 1.77
Shmt1P50431 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Shmt1P50431 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Shmt1P50431 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC26.08■■□□□ 1.77
Shmt1P50431 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
Shmt1P50431 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Retrieved 100 of 76,532 protein–RNA pairs in 9.8 ms