Protein–RNA interactions for Protein: P31648

Slc6a1, Sodium- and chloride-dependent GABA transporter 1, mousemouse

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc6a1P31648 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Slc6a1P31648 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Slc6a1P31648 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Slc6a1P31648 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Slc6a1P31648 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Slc6a1P31648 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Slc6a1P31648 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Slc6a1P31648 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC21.12■□□□□ 0.97
Slc6a1P31648 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Slc6a1P31648 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Slc6a1P31648 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Slc6a1P31648 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
Slc6a1P31648 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Slc6a1P31648 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Slc6a1P31648 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Slc6a1P31648 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Slc6a1P31648 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Slc6a1P31648 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Slc6a1P31648 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Slc6a1P31648 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Slc6a1P31648 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Slc6a1P31648 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Slc6a1P31648 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Slc6a1P31648 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Slc6a1P31648 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Slc6a1P31648 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Slc6a1P31648 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Slc6a1P31648 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC21.02■□□□□ 0.96
Slc6a1P31648 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Slc6a1P31648 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Slc6a1P31648 Mipep-204ENSMUST00000225043 1548 ntBASIC21.01■□□□□ 0.95
Slc6a1P31648 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.01■□□□□ 0.95
Slc6a1P31648 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC21■□□□□ 0.95
Slc6a1P31648 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Slc6a1P31648 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
Slc6a1P31648 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21■□□□□ 0.95
Slc6a1P31648 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Slc6a1P31648 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
Slc6a1P31648 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Slc6a1P31648 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Slc6a1P31648 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Slc6a1P31648 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Slc6a1P31648 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Slc6a1P31648 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Slc6a1P31648 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC20.93■□□□□ 0.94
Slc6a1P31648 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Slc6a1P31648 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Slc6a1P31648 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Slc6a1P31648 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Slc6a1P31648 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Slc6a1P31648 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Slc6a1P31648 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Slc6a1P31648 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Slc6a1P31648 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Slc6a1P31648 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Slc6a1P31648 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Slc6a1P31648 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Slc6a1P31648 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Slc6a1P31648 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Slc6a1P31648 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Slc6a1P31648 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Slc6a1P31648 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
Slc6a1P31648 Gm24804-201ENSMUST00000174982 85 ntBASIC20.83■□□□□ 0.93
Slc6a1P31648 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Slc6a1P31648 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Slc6a1P31648 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Slc6a1P31648 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Slc6a1P31648 AC166822.3-201ENSMUST00000227394 661 ntBASIC20.82■□□□□ 0.92
Slc6a1P31648 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Slc6a1P31648 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Slc6a1P31648 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Slc6a1P31648 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Slc6a1P31648 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Slc6a1P31648 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Slc6a1P31648 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Slc6a1P31648 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Slc6a1P31648 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Slc6a1P31648 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Slc6a1P31648 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC20.8■□□□□ 0.92
Slc6a1P31648 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Slc6a1P31648 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Slc6a1P31648 AL845457.1-201ENSMUST00000197244 68 ntBASIC20.79■□□□□ 0.92
Slc6a1P31648 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC20.79■□□□□ 0.92
Slc6a1P31648 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Slc6a1P31648 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Slc6a1P31648 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC20.78■□□□□ 0.92
Slc6a1P31648 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Slc6a1P31648 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Slc6a1P31648 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Slc6a1P31648 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Slc6a1P31648 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Slc6a1P31648 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Slc6a1P31648 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Slc6a1P31648 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Slc6a1P31648 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Slc6a1P31648 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Slc6a1P31648 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC20.74■□□□□ 0.91
Slc6a1P31648 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Slc6a1P31648 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Slc6a1P31648 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms