Protein–RNA interactions for Protein: A0A075B654

Trav3-4, T cell receptor alpha variable 3-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-4A0A075B654 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Trav3-4A0A075B654 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav3-4A0A075B654 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav3-4A0A075B654 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav3-4A0A075B654 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trav3-4A0A075B654 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav3-4A0A075B654 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav3-4A0A075B654 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Trav3-4A0A075B654 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trav3-4A0A075B654 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav3-4A0A075B654 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC16.51■□□□□ 0.23
Trav3-4A0A075B654 AC153890.1-201ENSMUST00000220021 2469 ntBASIC16.51■□□□□ 0.23
Trav3-4A0A075B654 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav3-4A0A075B654 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav3-4A0A075B654 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Trav3-4A0A075B654 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav3-4A0A075B654 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trav3-4A0A075B654 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
Trav3-4A0A075B654 Amer2-203ENSMUST00000225247 2662 ntBASIC16.49■□□□□ 0.23
Trav3-4A0A075B654 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav3-4A0A075B654 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
Trav3-4A0A075B654 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Trav3-4A0A075B654 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav3-4A0A075B654 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trav3-4A0A075B654 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav3-4A0A075B654 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav3-4A0A075B654 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav3-4A0A075B654 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC16.45■□□□□ 0.22
Trav3-4A0A075B654 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trav3-4A0A075B654 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav3-4A0A075B654 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trav3-4A0A075B654 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav3-4A0A075B654 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav3-4A0A075B654 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Trav3-4A0A075B654 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav3-4A0A075B654 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav3-4A0A075B654 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC16.42■□□□□ 0.22
Trav3-4A0A075B654 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav3-4A0A075B654 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav3-4A0A075B654 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav3-4A0A075B654 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Trav3-4A0A075B654 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav3-4A0A075B654 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav3-4A0A075B654 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav3-4A0A075B654 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav3-4A0A075B654 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trav3-4A0A075B654 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav3-4A0A075B654 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav3-4A0A075B654 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trav3-4A0A075B654 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav3-4A0A075B654 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav3-4A0A075B654 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Trav3-4A0A075B654 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC16.36■□□□□ 0.21
Trav3-4A0A075B654 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav3-4A0A075B654 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav3-4A0A075B654 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Trav3-4A0A075B654 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Trav3-4A0A075B654 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav3-4A0A075B654 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav3-4A0A075B654 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav3-4A0A075B654 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav3-4A0A075B654 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Trav3-4A0A075B654 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC16.34■□□□□ 0.21
Trav3-4A0A075B654 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trav3-4A0A075B654 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav3-4A0A075B654 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trav3-4A0A075B654 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC16.33■□□□□ 0.2
Trav3-4A0A075B654 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav3-4A0A075B654 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav3-4A0A075B654 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav3-4A0A075B654 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC16.33■□□□□ 0.2
Trav3-4A0A075B654 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav3-4A0A075B654 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Trav3-4A0A075B654 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trav3-4A0A075B654 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav3-4A0A075B654 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav3-4A0A075B654 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav3-4A0A075B654 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trav3-4A0A075B654 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav3-4A0A075B654 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav3-4A0A075B654 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav3-4A0A075B654 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC16.28■□□□□ 0.2
Trav3-4A0A075B654 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav3-4A0A075B654 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav3-4A0A075B654 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Trav3-4A0A075B654 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Trav3-4A0A075B654 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Trav3-4A0A075B654 AC122428.3-201ENSMUST00000215551 2290 ntBASIC16.26■□□□□ 0.19
Trav3-4A0A075B654 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav3-4A0A075B654 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav3-4A0A075B654 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav3-4A0A075B654 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav3-4A0A075B654 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Trav3-4A0A075B654 Gm6345-201ENSMUST00000180378 1691 ntBASIC16.24■□□□□ 0.19
Trav3-4A0A075B654 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav3-4A0A075B654 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav3-4A0A075B654 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav3-4A0A075B654 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC16.24■□□□□ 0.19
Trav3-4A0A075B654 AC124392.1-201ENSMUST00000225172 5324 ntBASIC16.23■□□□□ 0.19
Trav3-4A0A075B654 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms