Protein–RNA interactions for Protein: A0A075B641

Trav8-1, T cell receptor alpha variable 8-1 (Fragment), mousemouse

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8-1A0A075B641 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav8-1A0A075B641 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC17.53■□□□□ 0.4
Trav8-1A0A075B641 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav8-1A0A075B641 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trav8-1A0A075B641 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trav8-1A0A075B641 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav8-1A0A075B641 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC17.51■□□□□ 0.39
Trav8-1A0A075B641 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav8-1A0A075B641 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trav8-1A0A075B641 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trav8-1A0A075B641 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav8-1A0A075B641 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav8-1A0A075B641 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Trav8-1A0A075B641 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav8-1A0A075B641 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav8-1A0A075B641 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav8-1A0A075B641 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav8-1A0A075B641 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav8-1A0A075B641 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Trav8-1A0A075B641 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav8-1A0A075B641 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav8-1A0A075B641 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trav8-1A0A075B641 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav8-1A0A075B641 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav8-1A0A075B641 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC17.45■□□□□ 0.38
Trav8-1A0A075B641 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav8-1A0A075B641 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trav8-1A0A075B641 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav8-1A0A075B641 Rab21-202ENSMUST00000218831 843 ntBASIC17.43■□□□□ 0.38
Trav8-1A0A075B641 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav8-1A0A075B641 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav8-1A0A075B641 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav8-1A0A075B641 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trav8-1A0A075B641 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC17.42■□□□□ 0.38
Trav8-1A0A075B641 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC17.42■□□□□ 0.38
Trav8-1A0A075B641 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav8-1A0A075B641 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav8-1A0A075B641 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC17.41■□□□□ 0.38
Trav8-1A0A075B641 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trav8-1A0A075B641 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav8-1A0A075B641 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trav8-1A0A075B641 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav8-1A0A075B641 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav8-1A0A075B641 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC17.4■□□□□ 0.38
Trav8-1A0A075B641 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav8-1A0A075B641 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav8-1A0A075B641 Gm6345-201ENSMUST00000180378 1691 ntBASIC17.39■□□□□ 0.37
Trav8-1A0A075B641 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav8-1A0A075B641 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav8-1A0A075B641 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Trav8-1A0A075B641 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav8-1A0A075B641 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav8-1A0A075B641 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC17.38■□□□□ 0.37
Trav8-1A0A075B641 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trav8-1A0A075B641 Gm20634-201ENSMUST00000090779 2956 ntBASIC17.37■□□□□ 0.37
Trav8-1A0A075B641 Mipep-204ENSMUST00000225043 1548 ntBASIC17.37■□□□□ 0.37
Trav8-1A0A075B641 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav8-1A0A075B641 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav8-1A0A075B641 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
Trav8-1A0A075B641 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav8-1A0A075B641 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav8-1A0A075B641 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav8-1A0A075B641 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trav8-1A0A075B641 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav8-1A0A075B641 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Trav8-1A0A075B641 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trav8-1A0A075B641 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav8-1A0A075B641 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav8-1A0A075B641 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trav8-1A0A075B641 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
Trav8-1A0A075B641 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trav8-1A0A075B641 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
Trav8-1A0A075B641 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav8-1A0A075B641 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav8-1A0A075B641 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC17.3■□□□□ 0.36
Trav8-1A0A075B641 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav8-1A0A075B641 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav8-1A0A075B641 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav8-1A0A075B641 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav8-1A0A075B641 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Trav8-1A0A075B641 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav8-1A0A075B641 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav8-1A0A075B641 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav8-1A0A075B641 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
Trav8-1A0A075B641 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav8-1A0A075B641 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trav8-1A0A075B641 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav8-1A0A075B641 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trav8-1A0A075B641 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trav8-1A0A075B641 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trav8-1A0A075B641 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav8-1A0A075B641 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trav8-1A0A075B641 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trav8-1A0A075B641 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trav8-1A0A075B641 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Trav8-1A0A075B641 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trav8-1A0A075B641 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav8-1A0A075B641 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav8-1A0A075B641 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
Trav8-1A0A075B641 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms