Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav16d-dv11A0A075B617 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav16d-dv11A0A075B617 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav16d-dv11A0A075B617 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC18.03■□□□□ 0.48
Trav16d-dv11A0A075B617 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav16d-dv11A0A075B617 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Trav16d-dv11A0A075B617 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trav16d-dv11A0A075B617 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Trav16d-dv11A0A075B617 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
Trav16d-dv11A0A075B617 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav16d-dv11A0A075B617 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav16d-dv11A0A075B617 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav16d-dv11A0A075B617 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav16d-dv11A0A075B617 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav16d-dv11A0A075B617 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trav16d-dv11A0A075B617 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trav16d-dv11A0A075B617 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav16d-dv11A0A075B617 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav16d-dv11A0A075B617 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav16d-dv11A0A075B617 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav16d-dv11A0A075B617 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav16d-dv11A0A075B617 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Trav16d-dv11A0A075B617 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav16d-dv11A0A075B617 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav16d-dv11A0A075B617 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav16d-dv11A0A075B617 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav16d-dv11A0A075B617 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav16d-dv11A0A075B617 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Trav16d-dv11A0A075B617 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav16d-dv11A0A075B617 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trav16d-dv11A0A075B617 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav16d-dv11A0A075B617 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Trav16d-dv11A0A075B617 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav16d-dv11A0A075B617 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Trav16d-dv11A0A075B617 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav16d-dv11A0A075B617 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav16d-dv11A0A075B617 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trav16d-dv11A0A075B617 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav16d-dv11A0A075B617 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trav16d-dv11A0A075B617 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trav16d-dv11A0A075B617 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
Trav16d-dv11A0A075B617 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
Trav16d-dv11A0A075B617 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Trav16d-dv11A0A075B617 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav16d-dv11A0A075B617 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trav16d-dv11A0A075B617 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav16d-dv11A0A075B617 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav16d-dv11A0A075B617 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav16d-dv11A0A075B617 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav16d-dv11A0A075B617 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav16d-dv11A0A075B617 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC17.86■□□□□ 0.45
Trav16d-dv11A0A075B617 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav16d-dv11A0A075B617 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav16d-dv11A0A075B617 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav16d-dv11A0A075B617 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav16d-dv11A0A075B617 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Trav16d-dv11A0A075B617 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav16d-dv11A0A075B617 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav16d-dv11A0A075B617 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trav16d-dv11A0A075B617 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav16d-dv11A0A075B617 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav16d-dv11A0A075B617 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Trav16d-dv11A0A075B617 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav16d-dv11A0A075B617 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav16d-dv11A0A075B617 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trav16d-dv11A0A075B617 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav16d-dv11A0A075B617 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav16d-dv11A0A075B617 Gm30346-201ENSMUST00000218641 1699 ntBASIC17.79■□□□□ 0.44
Trav16d-dv11A0A075B617 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC17.79■□□□□ 0.44
Trav16d-dv11A0A075B617 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
Trav16d-dv11A0A075B617 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC17.78■□□□□ 0.44
Trav16d-dv11A0A075B617 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav16d-dv11A0A075B617 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trav16d-dv11A0A075B617 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav16d-dv11A0A075B617 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trav16d-dv11A0A075B617 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Trav16d-dv11A0A075B617 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav16d-dv11A0A075B617 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 14.6 ms