Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC26.43■■□□□ 1.82
USP44Q9H0E7 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC26.42■■□□□ 1.82
USP44Q9H0E7 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
USP44Q9H0E7 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USP44Q9H0E7 UQCRFS1P1-201ENST00000435169 820 ntBASIC26.42■■□□□ 1.82
USP44Q9H0E7 BRI3-207ENST00000539286 699 ntTSL 2 BASIC26.42■■□□□ 1.82
USP44Q9H0E7 DUX4L16-201ENST00000555130 1264 ntBASIC26.42■■□□□ 1.82
USP44Q9H0E7 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
USP44Q9H0E7 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
USP44Q9H0E7 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
USP44Q9H0E7 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
USP44Q9H0E7 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USP44Q9H0E7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC26.41■■□□□ 1.82
USP44Q9H0E7 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP44Q9H0E7 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP44Q9H0E7 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC26.41■■□□□ 1.82
USP44Q9H0E7 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC26.41■■□□□ 1.82
USP44Q9H0E7 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC26.41■■□□□ 1.82
USP44Q9H0E7 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC26.41■■□□□ 1.82
USP44Q9H0E7 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC26.41■■□□□ 1.82
USP44Q9H0E7 AC073111.5-205ENST00000641717 521 ntBASIC26.41■■□□□ 1.82
USP44Q9H0E7 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP44Q9H0E7 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP44Q9H0E7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP44Q9H0E7 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP44Q9H0E7 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP44Q9H0E7 BID-212ENST00000614949 1988 ntTSL 5 BASIC26.4■■□□□ 1.82
USP44Q9H0E7 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC26.4■■□□□ 1.82
USP44Q9H0E7 KRT16P2-201ENST00000414673 1423 ntBASIC26.4■■□□□ 1.82
USP44Q9H0E7 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP44Q9H0E7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP44Q9H0E7 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
USP44Q9H0E7 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
USP44Q9H0E7 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
USP44Q9H0E7 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
USP44Q9H0E7 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC26.4■■□□□ 1.82
USP44Q9H0E7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC26.4■■□□□ 1.82
USP44Q9H0E7 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC26.4■■□□□ 1.82
USP44Q9H0E7 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC26.4■■□□□ 1.82
USP44Q9H0E7 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
USP44Q9H0E7 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC26.4■■□□□ 1.82
USP44Q9H0E7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP44Q9H0E7 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC26.39■■□□□ 1.82
USP44Q9H0E7 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC26.39■■□□□ 1.82
USP44Q9H0E7 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
USP44Q9H0E7 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
USP44Q9H0E7 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.81
USP44Q9H0E7 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
USP44Q9H0E7 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
USP44Q9H0E7 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.81
USP44Q9H0E7 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC26.38■■□□□ 1.81
USP44Q9H0E7 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP44Q9H0E7 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC26.38■■□□□ 1.81
USP44Q9H0E7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP44Q9H0E7 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC26.38■■□□□ 1.81
USP44Q9H0E7 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC26.38■■□□□ 1.81
USP44Q9H0E7 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP44Q9H0E7 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
USP44Q9H0E7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP44Q9H0E7 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP44Q9H0E7 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP44Q9H0E7 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP44Q9H0E7 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP44Q9H0E7 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP44Q9H0E7 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
USP44Q9H0E7 WWC2-AS2-201ENST00000578387 2183 ntBASIC26.37■■□□□ 1.81
USP44Q9H0E7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP44Q9H0E7 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
USP44Q9H0E7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
USP44Q9H0E7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC26.37■■□□□ 1.81
USP44Q9H0E7 AC010536.3-201ENST00000620306 533 ntBASIC26.37■■□□□ 1.81
USP44Q9H0E7 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC26.37■■□□□ 1.81
USP44Q9H0E7 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP44Q9H0E7 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP44Q9H0E7 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USP44Q9H0E7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC26.36■■□□□ 1.81
USP44Q9H0E7 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP44Q9H0E7 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP44Q9H0E7 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC26.36■■□□□ 1.81
USP44Q9H0E7 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC26.36■■□□□ 1.81
USP44Q9H0E7 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC26.36■■□□□ 1.81
USP44Q9H0E7 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC26.36■■□□□ 1.81
USP44Q9H0E7 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
USP44Q9H0E7 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
USP44Q9H0E7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
USP44Q9H0E7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
USP44Q9H0E7 CNN2P6-201ENST00000439038 900 ntBASIC26.35■■□□□ 1.81
USP44Q9H0E7 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC26.35■■□□□ 1.81
USP44Q9H0E7 AC090192.1-201ENST00000517740 490 ntBASIC26.35■■□□□ 1.81
USP44Q9H0E7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
USP44Q9H0E7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP44Q9H0E7 DYM-203ENST00000442713 2147 ntTSL 2 BASIC26.35■■□□□ 1.81
USP44Q9H0E7 Z98882.1-201ENST00000622160 2253 ntBASIC26.34■■□□□ 1.81
USP44Q9H0E7 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC26.34■■□□□ 1.81
USP44Q9H0E7 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC26.34■■□□□ 1.81
USP44Q9H0E7 AC120498.10-201ENST00000621827 505 ntBASIC26.34■■□□□ 1.81
USP44Q9H0E7 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP44Q9H0E7 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP44Q9H0E7 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP44Q9H0E7 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms