Protein–RNA interactions for Protein: Q9CWU5

Khdc3, KH domain-containing protein 3, mousemouse

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Khdc3Q9CWU5 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Khdc3Q9CWU5 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Khdc3Q9CWU5 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Khdc3Q9CWU5 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Khdc3Q9CWU5 Gm5874-201ENSMUST00000096101 508 ntBASIC17.73■□□□□ 0.43
Khdc3Q9CWU5 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Khdc3Q9CWU5 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Khdc3Q9CWU5 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Khdc3Q9CWU5 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Khdc3Q9CWU5 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Khdc3Q9CWU5 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Khdc3Q9CWU5 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Khdc3Q9CWU5 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Khdc3Q9CWU5 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
Khdc3Q9CWU5 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Khdc3Q9CWU5 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Khdc3Q9CWU5 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Khdc3Q9CWU5 Gm5112-201ENSMUST00000204407 2368 ntBASIC17.71■□□□□ 0.43
Khdc3Q9CWU5 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Khdc3Q9CWU5 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.71■□□□□ 0.43
Khdc3Q9CWU5 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Khdc3Q9CWU5 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Khdc3Q9CWU5 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Khdc3Q9CWU5 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Khdc3Q9CWU5 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Khdc3Q9CWU5 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Khdc3Q9CWU5 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC17.7■□□□□ 0.42
Khdc3Q9CWU5 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Gm6627-201ENSMUST00000218299 2386 ntBASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Khdc3Q9CWU5 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Khdc3Q9CWU5 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Khdc3Q9CWU5 Gm13534-201ENSMUST00000121169 513 ntBASIC17.68■□□□□ 0.42
Khdc3Q9CWU5 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC17.68■□□□□ 0.42
Khdc3Q9CWU5 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.68■□□□□ 0.42
Khdc3Q9CWU5 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Khdc3Q9CWU5 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Khdc3Q9CWU5 Gm15853-202ENSMUST00000195518 2041 ntBASIC17.68■□□□□ 0.42
Khdc3Q9CWU5 Gm42642-201ENSMUST00000200683 355 ntBASIC17.68■□□□□ 0.42
Khdc3Q9CWU5 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Khdc3Q9CWU5 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Khdc3Q9CWU5 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Khdc3Q9CWU5 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.67■□□□□ 0.42
Khdc3Q9CWU5 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Khdc3Q9CWU5 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Khdc3Q9CWU5 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Khdc3Q9CWU5 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Khdc3Q9CWU5 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Khdc3Q9CWU5 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Khdc3Q9CWU5 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC17.67■□□□□ 0.42
Khdc3Q9CWU5 Gm18671-201ENSMUST00000214826 683 ntBASIC17.67■□□□□ 0.42
Khdc3Q9CWU5 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Khdc3Q9CWU5 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Khdc3Q9CWU5 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Khdc3Q9CWU5 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms