Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
ZNF560Q96MR9 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC22.6■■□□□ 1.21
ZNF560Q96MR9 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
ZNF560Q96MR9 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
ZNF560Q96MR9 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC22.6■■□□□ 1.21
ZNF560Q96MR9 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 AC061975.6-201ENST00000579045 1553 ntBASIC22.59■■□□□ 1.21
ZNF560Q96MR9 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 CDCA4P2-201ENST00000441182 718 ntBASIC22.59■■□□□ 1.21
ZNF560Q96MR9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
ZNF560Q96MR9 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 AC026185.1-201ENST00000445748 174 ntBASIC22.58■■□□□ 1.21
ZNF560Q96MR9 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 AC010536.3-201ENST00000620306 533 ntBASIC22.58■■□□□ 1.21
ZNF560Q96MR9 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
ZNF560Q96MR9 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
ZNF560Q96MR9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
ZNF560Q96MR9 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC22.58■■□□□ 1.2
ZNF560Q96MR9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
ZNF560Q96MR9 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 DUX4L16-201ENST00000555130 1264 ntBASIC22.57■■□□□ 1.2
ZNF560Q96MR9 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 RAP2CP1-201ENST00000605103 478 ntBASIC22.57■■□□□ 1.2
ZNF560Q96MR9 AC231657.2-201ENST00000624556 255 ntBASIC22.57■■□□□ 1.2
ZNF560Q96MR9 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ZNF560Q96MR9 NARF-205ENST00000412079 1760 ntTSL 5 BASIC22.56■■□□□ 1.2
ZNF560Q96MR9 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
ZNF560Q96MR9 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC22.56■■□□□ 1.2
ZNF560Q96MR9 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
ZNF560Q96MR9 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
ZNF560Q96MR9 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
ZNF560Q96MR9 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC22.56■■□□□ 1.2
ZNF560Q96MR9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC22.56■■□□□ 1.2
ZNF560Q96MR9 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
ZNF560Q96MR9 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
ZNF560Q96MR9 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 STX5-203ENST00000394690 1568 ntTSL 5 BASIC22.55■■□□□ 1.2
ZNF560Q96MR9 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
ZNF560Q96MR9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC22.54■■□□□ 1.2
ZNF560Q96MR9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
ZNF560Q96MR9 ME2-206ENST00000638410 2289 ntTSL 5 BASIC22.54■■□□□ 1.2
ZNF560Q96MR9 ME2-210ENST00000639255 2262 ntTSL 5 BASIC22.54■■□□□ 1.2
ZNF560Q96MR9 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
ZNF560Q96MR9 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC22.54■■□□□ 1.2
ZNF560Q96MR9 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC22.54■■□□□ 1.2
ZNF560Q96MR9 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
ZNF560Q96MR9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
ZNF560Q96MR9 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms