Protein–RNA interactions for Protein: Q80W14

Prpf40b, Pre-mRNA-processing factor 40 homolog B, mousemouse

Predictions only

Length 870 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40bQ80W14 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Prpf40bQ80W14 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Prpf40bQ80W14 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Gm5112-201ENSMUST00000204407 2368 ntBASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Gm13509-201ENSMUST00000119733 1308 ntBASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40bQ80W14 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40bQ80W14 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC21.33■■□□□ 1
Prpf40bQ80W14 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Prpf40bQ80W14 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC21.32■■□□□ 1
Prpf40bQ80W14 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC21.32■■□□□ 1
Prpf40bQ80W14 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Prpf40bQ80W14 AC153881.1-201ENSMUST00000214448 284 ntBASIC21.32■■□□□ 1
Prpf40bQ80W14 AC121577.1-201ENSMUST00000227302 707 ntBASIC21.32■■□□□ 1
Prpf40bQ80W14 Gm9987-201ENSMUST00000069768 567 ntBASIC21.32■■□□□ 1
Prpf40bQ80W14 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Prpf40bQ80W14 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Prpf40bQ80W14 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Prpf40bQ80W14 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Prpf40bQ80W14 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Prpf40bQ80W14 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Prpf40bQ80W14 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC21.31■■□□□ 1
Prpf40bQ80W14 Gm9484-201ENSMUST00000195892 1159 ntBASIC21.31■■□□□ 1
Prpf40bQ80W14 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC21.31■■□□□ 1
Prpf40bQ80W14 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Prpf40bQ80W14 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC21.31■■□□□ 1
Prpf40bQ80W14 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC21.31■■□□□ 1
Prpf40bQ80W14 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
Prpf40bQ80W14 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Prpf40bQ80W14 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Prpf40bQ80W14 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC21.3■■□□□ 1
Prpf40bQ80W14 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Prpf40bQ80W14 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC21.3■■□□□ 1
Prpf40bQ80W14 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Prpf40bQ80W14 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Prpf40bQ80W14 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC21.3■■□□□ 1
Prpf40bQ80W14 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Prpf40bQ80W14 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
Prpf40bQ80W14 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.29■■□□□ 1
Prpf40bQ80W14 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC21.29■■□□□ 1
Prpf40bQ80W14 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Prpf40bQ80W14 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Prpf40bQ80W14 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Prpf40bQ80W14 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC21.29■■□□□ 1
Prpf40bQ80W14 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Prpf40bQ80W14 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC21.29■■□□□ 1
Prpf40bQ80W14 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prpf40bQ80W14 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Prpf40bQ80W14 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC21.28■■□□□ 1
Prpf40bQ80W14 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC21.28■■□□□ 1
Prpf40bQ80W14 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
Prpf40bQ80W14 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC21.28■■□□□ 1
Prpf40bQ80W14 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prpf40bQ80W14 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prpf40bQ80W14 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
Prpf40bQ80W14 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prpf40bQ80W14 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Prpf40bQ80W14 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
Prpf40bQ80W14 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Prpf40bQ80W14 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.28■■□□□ 1
Prpf40bQ80W14 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prpf40bQ80W14 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Prpf40bQ80W14 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Prpf40bQ80W14 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Prpf40bQ80W14 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Prpf40bQ80W14 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Prpf40bQ80W14 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC21.27■■□□□ 1
Prpf40bQ80W14 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
Prpf40bQ80W14 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC21.27■■□□□ 1
Prpf40bQ80W14 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Prpf40bQ80W14 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Prpf40bQ80W14 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Prpf40bQ80W14 Dio3-201ENSMUST00000097228 1449 ntBASIC21.27■■□□□ 1
Prpf40bQ80W14 AA386476-201ENSMUST00000098781 1665 ntBASIC21.27■■□□□ 1
Prpf40bQ80W14 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Prpf40bQ80W14 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Gm10698-201ENSMUST00000182663 604 ntBASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40bQ80W14 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms