Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Upf3bQ3ULL6 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Upf3bQ3ULL6 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Upf3bQ3ULL6 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Gm6365-201ENSMUST00000054711 744 ntBASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
Upf3bQ3ULL6 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Upf3bQ3ULL6 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Upf3bQ3ULL6 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Upf3bQ3ULL6 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.81■□□□□ 0.76
Upf3bQ3ULL6 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Upf3bQ3ULL6 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Upf3bQ3ULL6 Gm42555-201ENSMUST00000199304 1039 ntBASIC19.81■□□□□ 0.76
Upf3bQ3ULL6 Gm9885-202ENSMUST00000186234 2209 ntBASIC19.81■□□□□ 0.76
Upf3bQ3ULL6 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Upf3bQ3ULL6 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Upf3bQ3ULL6 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Upf3bQ3ULL6 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Upf3bQ3ULL6 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Upf3bQ3ULL6 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.8■□□□□ 0.76
Upf3bQ3ULL6 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Upf3bQ3ULL6 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Upf3bQ3ULL6 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Upf3bQ3ULL6 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.8■□□□□ 0.76
Upf3bQ3ULL6 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Upf3bQ3ULL6 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Upf3bQ3ULL6 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Upf3bQ3ULL6 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3bQ3ULL6 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3bQ3ULL6 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3bQ3ULL6 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.78■□□□□ 0.76
Upf3bQ3ULL6 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3bQ3ULL6 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3bQ3ULL6 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3bQ3ULL6 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Upf3bQ3ULL6 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
Upf3bQ3ULL6 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
Upf3bQ3ULL6 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3bQ3ULL6 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Upf3bQ3ULL6 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3bQ3ULL6 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3bQ3ULL6 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3bQ3ULL6 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3bQ3ULL6 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3bQ3ULL6 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC19.77■□□□□ 0.76
Upf3bQ3ULL6 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3bQ3ULL6 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC19.77■□□□□ 0.76
Upf3bQ3ULL6 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
Upf3bQ3ULL6 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3bQ3ULL6 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Upf3bQ3ULL6 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Upf3bQ3ULL6 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 Gm7290-201ENSMUST00000104990 617 ntBASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 Gm12918-201ENSMUST00000120234 636 ntBASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 Gm15710-201ENSMUST00000121821 636 ntBASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 Gm5075-201ENSMUST00000196916 622 ntBASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Upf3bQ3ULL6 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 74 ms