Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Clk4O35493 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Clk4O35493 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Clk4O35493 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clk4O35493 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clk4O35493 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clk4O35493 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.71■□□□□ 0.43
Clk4O35493 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Clk4O35493 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clk4O35493 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clk4O35493 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clk4O35493 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clk4O35493 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clk4O35493 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clk4O35493 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Clk4O35493 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clk4O35493 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Clk4O35493 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Clk4O35493 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.7■□□□□ 0.42
Clk4O35493 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clk4O35493 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clk4O35493 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clk4O35493 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC17.7■□□□□ 0.42
Clk4O35493 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Clk4O35493 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clk4O35493 Fam105a-203ENSMUST00000226170 3043 ntBASIC17.7■□□□□ 0.42
Clk4O35493 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Clk4O35493 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clk4O35493 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clk4O35493 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.69■□□□□ 0.42
Clk4O35493 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Slc35b2-207ENSMUST00000226086 850 ntBASIC17.69■□□□□ 0.42
Clk4O35493 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Clk4O35493 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Clk4O35493 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk4O35493 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk4O35493 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk4O35493 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.68■□□□□ 0.42
Clk4O35493 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk4O35493 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Clk4O35493 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Clk4O35493 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC17.68■□□□□ 0.42
Clk4O35493 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC17.68■□□□□ 0.42
Clk4O35493 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC17.68■□□□□ 0.42
Clk4O35493 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC17.68■□□□□ 0.42
Clk4O35493 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk4O35493 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Clk4O35493 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk4O35493 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk4O35493 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.68■□□□□ 0.42
Clk4O35493 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk4O35493 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clk4O35493 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk4O35493 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Clk4O35493 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Clk4O35493 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk4O35493 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.67■□□□□ 0.42
Clk4O35493 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Clk4O35493 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk4O35493 Gm37352-201ENSMUST00000193908 2181 ntBASIC17.67■□□□□ 0.42
Clk4O35493 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk4O35493 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clk4O35493 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk4O35493 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk4O35493 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.66■□□□□ 0.42
Clk4O35493 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Clk4O35493 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC17.66■□□□□ 0.42
Clk4O35493 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk4O35493 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk4O35493 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Clk4O35493 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk4O35493 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Clk4O35493 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk4O35493 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC17.66■□□□□ 0.42
Clk4O35493 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk4O35493 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk4O35493 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk4O35493 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk4O35493 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clk4O35493 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk4O35493 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Clk4O35493 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.65■□□□□ 0.42
Clk4O35493 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Clk4O35493 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Clk4O35493 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clk4O35493 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms