Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ushbp1Q8R370 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Ushbp1Q8R370 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ushbp1Q8R370 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ushbp1Q8R370 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ushbp1Q8R370 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ushbp1Q8R370 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
Ushbp1Q8R370 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.86■□□□□ 0.93
Ushbp1Q8R370 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ushbp1Q8R370 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
Ushbp1Q8R370 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ushbp1Q8R370 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ushbp1Q8R370 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ushbp1Q8R370 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ushbp1Q8R370 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ushbp1Q8R370 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Gm38205-201ENSMUST00000192243 258 ntBASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ushbp1Q8R370 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ushbp1Q8R370 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ushbp1Q8R370 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Ushbp1Q8R370 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ushbp1Q8R370 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.84■□□□□ 0.93
Ushbp1Q8R370 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Ushbp1Q8R370 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ushbp1Q8R370 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Ushbp1Q8R370 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ushbp1Q8R370 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ushbp1Q8R370 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ushbp1Q8R370 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.83■□□□□ 0.93
Ushbp1Q8R370 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ushbp1Q8R370 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Ushbp1Q8R370 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Ushbp1Q8R370 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ushbp1Q8R370 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ushbp1Q8R370 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ushbp1Q8R370 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC20.82■□□□□ 0.92
Ushbp1Q8R370 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.82■□□□□ 0.92
Ushbp1Q8R370 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ushbp1Q8R370 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ushbp1Q8R370 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.82■□□□□ 0.92
Ushbp1Q8R370 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ushbp1Q8R370 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
Ushbp1Q8R370 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.81■□□□□ 0.92
Ushbp1Q8R370 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.81■□□□□ 0.92
Ushbp1Q8R370 Gm4968-201ENSMUST00000071458 858 ntBASIC20.81■□□□□ 0.92
Ushbp1Q8R370 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ushbp1Q8R370 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ushbp1Q8R370 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ushbp1Q8R370 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ushbp1Q8R370 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ushbp1Q8R370 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ushbp1Q8R370 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Gm15853-202ENSMUST00000195518 2041 ntBASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Ushbp1Q8R370 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ushbp1Q8R370 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.78■□□□□ 0.92
Ushbp1Q8R370 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ushbp1Q8R370 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ushbp1Q8R370 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms