Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC20.58■□□□□ 0.88
Trim9Q8C7M3 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim9Q8C7M3 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim9Q8C7M3 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim9Q8C7M3 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Trim9Q8C7M3 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim9Q8C7M3 Gm18284-201ENSMUST00000172604 624 ntBASIC20.57■□□□□ 0.88
Trim9Q8C7M3 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim9Q8C7M3 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim9Q8C7M3 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.57■□□□□ 0.88
Trim9Q8C7M3 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim9Q8C7M3 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim9Q8C7M3 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim9Q8C7M3 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim9Q8C7M3 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.55■□□□□ 0.88
Trim9Q8C7M3 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.55■□□□□ 0.88
Trim9Q8C7M3 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim9Q8C7M3 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim9Q8C7M3 Gm18671-201ENSMUST00000214826 683 ntBASIC20.55■□□□□ 0.88
Trim9Q8C7M3 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim9Q8C7M3 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim9Q8C7M3 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.55■□□□□ 0.88
Trim9Q8C7M3 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim9Q8C7M3 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
Trim9Q8C7M3 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim9Q8C7M3 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim9Q8C7M3 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Trim9Q8C7M3 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC20.54■□□□□ 0.88
Trim9Q8C7M3 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trim9Q8C7M3 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Trim9Q8C7M3 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim9Q8C7M3 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim9Q8C7M3 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Gm6420-201ENSMUST00000193885 723 ntBASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim9Q8C7M3 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim9Q8C7M3 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim9Q8C7M3 Dmtn-210ENSMUST00000228824 2377 ntBASIC20.52■□□□□ 0.88
Trim9Q8C7M3 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.52■□□□□ 0.88
Trim9Q8C7M3 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim9Q8C7M3 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.52■□□□□ 0.88
Trim9Q8C7M3 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim9Q8C7M3 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim9Q8C7M3 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim9Q8C7M3 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.52■□□□□ 0.87
Trim9Q8C7M3 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Trim9Q8C7M3 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 AV356131-201ENSMUST00000206201 750 ntBASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Gm7514-201ENSMUST00000209475 934 ntBASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim9Q8C7M3 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim9Q8C7M3 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.5■□□□□ 0.87
Trim9Q8C7M3 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim9Q8C7M3 Gm10849-201ENSMUST00000100397 618 ntBASIC20.5■□□□□ 0.87
Trim9Q8C7M3 Nespas-201ENSMUST00000143738 1083 ntBASIC20.5■□□□□ 0.87
Trim9Q8C7M3 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.5■□□□□ 0.87
Trim9Q8C7M3 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim9Q8C7M3 Gm8309-201ENSMUST00000206627 1448 ntBASIC20.5■□□□□ 0.87
Trim9Q8C7M3 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim9Q8C7M3 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms