Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC20.53■□□□□ 0.88
Cln3Q61124 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC20.53■□□□□ 0.88
Cln3Q61124 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC20.53■□□□□ 0.88
Cln3Q61124 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cln3Q61124 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Cln3Q61124 Gm20472-201ENSMUST00000174403 1240 ntBASIC20.53■□□□□ 0.88
Cln3Q61124 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Cln3Q61124 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cln3Q61124 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cln3Q61124 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cln3Q61124 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Cln3Q61124 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cln3Q61124 Gm8309-201ENSMUST00000206627 1448 ntBASIC20.53■□□□□ 0.88
Cln3Q61124 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC20.52■□□□□ 0.88
Cln3Q61124 Mir5122-201ENSMUST00000175004 89 ntBASIC20.52■□□□□ 0.88
Cln3Q61124 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Cln3Q61124 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Cln3Q61124 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC20.52■□□□□ 0.87
Cln3Q61124 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.51■□□□□ 0.87
Cln3Q61124 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cln3Q61124 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cln3Q61124 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC20.51■□□□□ 0.87
Cln3Q61124 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cln3Q61124 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cln3Q61124 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cln3Q61124 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cln3Q61124 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cln3Q61124 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cln3Q61124 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cln3Q61124 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cln3Q61124 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cln3Q61124 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
Cln3Q61124 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cln3Q61124 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cln3Q61124 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cln3Q61124 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cln3Q61124 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cln3Q61124 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cln3Q61124 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cln3Q61124 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC20.5■□□□□ 0.87
Cln3Q61124 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cln3Q61124 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cln3Q61124 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cln3Q61124 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cln3Q61124 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cln3Q61124 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cln3Q61124 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Cln3Q61124 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cln3Q61124 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Cln3Q61124 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC20.49■□□□□ 0.87
Cln3Q61124 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Cln3Q61124 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Cln3Q61124 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Cln3Q61124 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC20.49■□□□□ 0.87
Cln3Q61124 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cln3Q61124 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cln3Q61124 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cln3Q61124 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Cln3Q61124 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cln3Q61124 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cln3Q61124 AC175538.1-201ENSMUST00000225343 1269 ntBASIC20.48■□□□□ 0.87
Cln3Q61124 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cln3Q61124 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cln3Q61124 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cln3Q61124 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cln3Q61124 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cln3Q61124 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Cln3Q61124 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Cln3Q61124 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cln3Q61124 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Cln3Q61124 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 Gm9987-201ENSMUST00000069768 567 ntBASIC20.47■□□□□ 0.87
Cln3Q61124 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cln3Q61124 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
Cln3Q61124 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20.46■□□□□ 0.87
Cln3Q61124 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC20.46■□□□□ 0.87
Cln3Q61124 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 AC153881.2-201ENSMUST00000214877 204 ntBASIC20.46■□□□□ 0.87
Cln3Q61124 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Zfp783-201ENSMUST00000095946 670 ntBASIC20.46■□□□□ 0.87
Cln3Q61124 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cln3Q61124 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms