Protein–RNA interactions for Protein: Q4FZC9

Syne3, Nesprin-3, mousemouse

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne3Q4FZC9 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne3Q4FZC9 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne3Q4FZC9 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Syne3Q4FZC9 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne3Q4FZC9 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne3Q4FZC9 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Syne3Q4FZC9 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne3Q4FZC9 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Syne3Q4FZC9 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Gm38205-201ENSMUST00000192243 258 ntBASIC19.7■□□□□ 0.74
Syne3Q4FZC9 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC19.7■□□□□ 0.74
Syne3Q4FZC9 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Gm43182-201ENSMUST00000199476 2528 ntBASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Syne3Q4FZC9 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.68■□□□□ 0.74
Syne3Q4FZC9 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.68■□□□□ 0.74
Syne3Q4FZC9 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
Syne3Q4FZC9 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Syne3Q4FZC9 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC19.68■□□□□ 0.74
Syne3Q4FZC9 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Syne3Q4FZC9 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.68■□□□□ 0.74
Syne3Q4FZC9 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Syne3Q4FZC9 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne3Q4FZC9 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne3Q4FZC9 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Syne3Q4FZC9 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne3Q4FZC9 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne3Q4FZC9 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne3Q4FZC9 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne3Q4FZC9 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Syne3Q4FZC9 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Syne3Q4FZC9 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne3Q4FZC9 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Syne3Q4FZC9 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Syne3Q4FZC9 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.65■□□□□ 0.74
Syne3Q4FZC9 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Syne3Q4FZC9 Gm42569-201ENSMUST00000200539 472 ntBASIC19.65■□□□□ 0.74
Syne3Q4FZC9 Gm10033-202ENSMUST00000211874 928 ntBASIC19.65■□□□□ 0.74
Syne3Q4FZC9 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Syne3Q4FZC9 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Syne3Q4FZC9 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Syne3Q4FZC9 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Syne3Q4FZC9 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Syne3Q4FZC9 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Syne3Q4FZC9 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Syne3Q4FZC9 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Syne3Q4FZC9 Grk6-206ENSMUST00000224995 2971 ntBASIC19.64■□□□□ 0.73
Syne3Q4FZC9 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Syne3Q4FZC9 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.64■□□□□ 0.73
Syne3Q4FZC9 AV356131-201ENSMUST00000206201 750 ntBASIC19.64■□□□□ 0.73
Syne3Q4FZC9 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.64■□□□□ 0.73
Syne3Q4FZC9 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Syne3Q4FZC9 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 124.2 ms