Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HINT3Q9NQE9 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 OXCT2P1-201ENST00000447263 1535 ntBASIC19.11■□□□□ 0.65
HINT3Q9NQE9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 AC135279.3-201ENST00000610945 1311 ntBASIC19.11■□□□□ 0.65
HINT3Q9NQE9 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 AC106739.1-201ENST00000617035 715 ntBASIC19.11■□□□□ 0.65
HINT3Q9NQE9 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HINT3Q9NQE9 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 MIR638-201ENST00000385237 100 ntBASIC19.1■□□□□ 0.65
HINT3Q9NQE9 SERBP1P1-201ENST00000396021 1160 ntBASIC19.1■□□□□ 0.65
HINT3Q9NQE9 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.1■□□□□ 0.65
HINT3Q9NQE9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 AC133561.4-201ENST00000566112 224 ntBASIC19.1■□□□□ 0.65
HINT3Q9NQE9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 AL138724.1-201ENST00000606771 1088 ntBASIC19.1■□□□□ 0.65
HINT3Q9NQE9 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HINT3Q9NQE9 LINC01521-201ENST00000504184 1943 ntBASIC19.1■□□□□ 0.65
HINT3Q9NQE9 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 AC024257.2-201ENST00000549699 147 ntBASIC19.09■□□□□ 0.65
HINT3Q9NQE9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HINT3Q9NQE9 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HINT3Q9NQE9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HINT3Q9NQE9 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HINT3Q9NQE9 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
HINT3Q9NQE9 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
HINT3Q9NQE9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HINT3Q9NQE9 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
HINT3Q9NQE9 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
HINT3Q9NQE9 AC003102.1-202ENST00000563394 1796 ntBASIC19.08■□□□□ 0.64
HINT3Q9NQE9 AL049796.1-201ENST00000565336 1766 ntBASIC19.08■□□□□ 0.64
HINT3Q9NQE9 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
HINT3Q9NQE9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.08■□□□□ 0.64
HINT3Q9NQE9 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HINT3Q9NQE9 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HINT3Q9NQE9 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.08■□□□□ 0.64
HINT3Q9NQE9 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HINT3Q9NQE9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.08■□□□□ 0.64
HINT3Q9NQE9 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms