Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Vps28Q9D1C8 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.08■□□□□ 0.64
Vps28Q9D1C8 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps28Q9D1C8 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps28Q9D1C8 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Vps28Q9D1C8 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps28Q9D1C8 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Gm26971-201ENSMUST00000182423 1072 ntBASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps28Q9D1C8 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Gm7290-201ENSMUST00000104990 617 ntBASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Gm12918-201ENSMUST00000120234 636 ntBASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Gm15710-201ENSMUST00000121821 636 ntBASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Gm5075-201ENSMUST00000196916 622 ntBASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps28Q9D1C8 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps28Q9D1C8 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Vps28Q9D1C8 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vps28Q9D1C8 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vps28Q9D1C8 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vps28Q9D1C8 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Vps28Q9D1C8 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
Vps28Q9D1C8 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.03■□□□□ 0.64
Vps28Q9D1C8 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Vps28Q9D1C8 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Vps28Q9D1C8 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vps28Q9D1C8 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Vps28Q9D1C8 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Vps28Q9D1C8 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.02■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms