Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC17.93■□□□□ 0.46
ClpbQ60649 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ClpbQ60649 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ClpbQ60649 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
ClpbQ60649 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
ClpbQ60649 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ClpbQ60649 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ClpbQ60649 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ClpbQ60649 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ClpbQ60649 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC17.92■□□□□ 0.46
ClpbQ60649 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ClpbQ60649 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC17.92■□□□□ 0.46
ClpbQ60649 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.92■□□□□ 0.46
ClpbQ60649 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.92■□□□□ 0.46
ClpbQ60649 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
ClpbQ60649 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
ClpbQ60649 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ClpbQ60649 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ClpbQ60649 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.92■□□□□ 0.46
ClpbQ60649 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ClpbQ60649 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ClpbQ60649 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
ClpbQ60649 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ClpbQ60649 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ClpbQ60649 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ClpbQ60649 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
ClpbQ60649 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ClpbQ60649 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ClpbQ60649 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ClpbQ60649 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
ClpbQ60649 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC17.91■□□□□ 0.46
ClpbQ60649 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ClpbQ60649 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ClpbQ60649 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ClpbQ60649 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ClpbQ60649 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ClpbQ60649 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ClpbQ60649 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ClpbQ60649 Gm38342-201ENSMUST00000195710 2980 ntBASIC17.9■□□□□ 0.46
ClpbQ60649 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
ClpbQ60649 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ClpbQ60649 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
ClpbQ60649 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ClpbQ60649 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ClpbQ60649 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ClpbQ60649 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ClpbQ60649 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ClpbQ60649 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
ClpbQ60649 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
ClpbQ60649 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ClpbQ60649 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ClpbQ60649 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.89■□□□□ 0.45
ClpbQ60649 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
ClpbQ60649 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ClpbQ60649 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ClpbQ60649 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ClpbQ60649 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ClpbQ60649 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ClpbQ60649 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ClpbQ60649 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ClpbQ60649 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
ClpbQ60649 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC17.89■□□□□ 0.45
ClpbQ60649 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
ClpbQ60649 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC17.88■□□□□ 0.45
ClpbQ60649 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ClpbQ60649 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ClpbQ60649 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.88■□□□□ 0.45
ClpbQ60649 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC17.88■□□□□ 0.45
ClpbQ60649 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ClpbQ60649 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ClpbQ60649 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
ClpbQ60649 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ClpbQ60649 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ClpbQ60649 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
ClpbQ60649 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
ClpbQ60649 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.87■□□□□ 0.45
ClpbQ60649 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
ClpbQ60649 Gm6627-201ENSMUST00000218299 2386 ntBASIC17.87■□□□□ 0.45
ClpbQ60649 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
ClpbQ60649 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
ClpbQ60649 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms