Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC8.67□□□□□ -1.028e-14■■■□□ 16.2
U2AF1Q01081 SNHG5-204ENST00000425170 489 ntTSL 27.72□□□□□ -1.178e-14■■■□□ 16.2
U2AF1Q01081 SNHG5-216ENST00000623267 374 ntTSL 57.44□□□□□ -1.228e-14■■■□□ 16.2
U2AF1Q01081 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC7.44□□□□□ -1.228e-14■■■□□ 16.2
U2AF1Q01081 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC6.82□□□□□ -1.328e-14■■■□□ 16.2
U2AF1Q01081 SNHG5-205ENST00000427501 680 ntTSL 25.38□□□□□ -1.558e-14■■■□□ 16.2
U2AF1Q01081 SNHG5-208ENST00000433843 388 ntTSL 22.05□□□□□ -2.088e-14■■■□□ 16.2
U2AF1Q01081 SNHG1-224ENST00000545688 610 ntTSL 35.78□□□□□ -1.487e-8■■■□□ 16.2
U2AF1Q01081 EPB41-212ENST00000490308 354 ntTSL 33.55□□□□□ -1.842e-6■■■□□ 16.2
U2AF1Q01081 EPB41-211ENST00000488277 262 ntTSL 33.17□□□□□ -1.92e-6■■■□□ 16.2
U2AF1Q01081 NKTR-210ENST00000466553 716 ntTSL 25.54□□□□□ -1.528e-9■■■□□ 16.2
U2AF1Q01081 NKTR-217ENST00000498730 4912 ntTSL 25.27□□□□□ -1.578e-9■■■□□ 16.2
U2AF1Q01081 NKTR-209ENST00000465584 3839 ntTSL 23.02□□□□□ -1.938e-9■■■□□ 16.2
U2AF1Q01081 EIF4G2-201ENST00000339995 3978 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.422e-6■■■□□ 16.2
U2AF1Q01081 EIF4G2-232ENST00000640650 2724 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.422e-6■■■□□ 16.2
U2AF1Q01081 EIF4G2-225ENST00000532383 6769 ntTSL 1 (best)11.95□□□□□ -0.52e-6■■■□□ 16.2
U2AF1Q01081 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC9.88□□□□□ -0.832e-6■■■□□ 16.2
U2AF1Q01081 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.872e-6■■■□□ 16.2
U2AF1Q01081 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.952e-6■■■□□ 16.2
U2AF1Q01081 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.68■□□□□ 0.95e-7■■■□□ 16.1
U2AF1Q01081 KIAA0907-208ENST00000482337 1135 ntTSL 1 (best)13.28□□□□□ -0.285e-7■■■□□ 16.1
U2AF1Q01081 DDX39B-203ENST00000417023 561 ntTSL 517.24■□□□□ 0.353e-17■■■□□ 16.1
U2AF1Q01081 DDX39B-221ENST00000484566 857 ntTSL 511.28□□□□□ -0.63e-17■■■□□ 16.1
U2AF1Q01081 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.128e-9■■■□□ 16.1
U2AF1Q01081 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.082e-12■■■□□ 16.1
U2AF1Q01081 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC21.77■■□□□ 1.082e-12■■■□□ 16.1
U2AF1Q01081 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC21.57■■□□□ 1.042e-12■■■□□ 16.1
U2AF1Q01081 WARS-232ENST00000556645 2508 ntTSL 5 BASIC20.84■□□□□ 0.932e-6■■■□□ 16.1
U2AF1Q01081 UCKL1-207ENST00000632800 1530 ntTSL 519.41■□□□□ 0.72e-12■■■□□ 16.1
U2AF1Q01081 WARS-203ENST00000358655 2466 ntTSL 2 BASIC19.28■□□□□ 0.682e-6■■■□□ 16.1
U2AF1Q01081 UCKL1-204ENST00000430743 888 ntTSL 317.23■□□□□ 0.352e-12■■■□□ 16.1
U2AF1Q01081 WARS-202ENST00000355338 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.092e-6■■■□□ 16.1
U2AF1Q01081 WARS-201ENST00000344102 2690 ntTSL 5 BASIC13.43□□□□□ -0.262e-6■■■□□ 16.1
U2AF1Q01081 WARS-238ENST00000557135 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.312e-6■■■□□ 16.1
U2AF1Q01081 WARS-220ENST00000554950 1376 ntTSL 212.82□□□□□ -0.362e-6■■■□□ 16.1
U2AF1Q01081 WARS-242ENST00000557614 499 ntTSL 211.24□□□□□ -0.612e-6■■■□□ 16.1
U2AF1Q01081 WARS-204ENST00000392882 2938 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.642e-6■■■□□ 16.1
U2AF1Q01081 WARS-216ENST00000554601 719 ntTSL 28.86□□□□□ -0.992e-6■■■□□ 16.1
U2AF1Q01081 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC30.31■■■□□ 2.445e-60■■■□□ 16.1
U2AF1Q01081 ARID1A-209ENST00000615191 3804 ntTSL 5 BASIC11.69□□□□□ -0.545e-7■■■□□ 16.1
U2AF1Q01081 MFSD8-241ENST00000641686 4991 ntAPPRIS P1 BASIC17.2■□□□□ 0.342e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-254ENST00000641882 1792 nt15.02□□□□□ -0.012e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-208ENST00000515130 3314 ntTSL 514.49□□□□□ -0.092e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-206ENST00000509826 1720 ntTSL 214.43□□□□□ -0.12e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-257ENST00000642012 1711 nt14.43□□□□□ -0.12e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-259ENST00000642042 2303 ntBASIC12.82□□□□□ -0.362e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-207ENST00000513559 1813 ntTSL 2 BASIC10.77□□□□□ -0.682e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-215ENST00000641146 4780 nt10.61□□□□□ -0.712e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-227ENST00000641393 4069 ntBASIC10.38□□□□□ -0.752e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-251ENST00000641843 1596 nt10.2□□□□□ -0.782e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-253ENST00000641870 2109 nt9.98□□□□□ -0.812e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-218ENST00000641186 4448 ntBASIC9.97□□□□□ -0.812e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-226ENST00000641388 778 nt9.96□□□□□ -0.822e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-260ENST00000642078 1747 nt9.9□□□□□ -0.832e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-244ENST00000641742 1823 nt9.89□□□□□ -0.832e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-256ENST00000641949 1640 ntBASIC9.67□□□□□ -0.862e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-246ENST00000641748 3201 nt9.54□□□□□ -0.882e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-222ENST00000641332 2759 nt9.48□□□□□ -0.892e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-217ENST00000641178 4374 ntBASIC9.24□□□□□ -0.932e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-252ENST00000641869 1076 nt8.33□□□□□ -1.082e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-223ENST00000641340 2098 nt8.12□□□□□ -1.112e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-229ENST00000641413 854 nt8.09□□□□□ -1.112e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-219ENST00000641228 2559 ntBASIC7.78□□□□□ -1.162e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-247ENST00000641753 3007 nt7.74□□□□□ -1.172e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-239ENST00000641590 2479 ntBASIC7.7□□□□□ -1.182e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.22e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-230ENST00000641434 3209 nt7.53□□□□□ -1.22e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-240ENST00000641658 1731 nt7.32□□□□□ -1.242e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-228ENST00000641397 3925 nt6.95□□□□□ -1.32e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-235ENST00000641508 4321 nt6.36□□□□□ -1.392e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-216ENST00000641147 4009 ntBASIC6.29□□□□□ -1.42e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-242ENST00000641690 4199 ntBASIC5.84□□□□□ -1.472e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-232ENST00000641464 4197 nt5.4□□□□□ -1.552e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-211ENST00000641092 4054 nt5.14□□□□□ -1.592e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-212ENST00000641133 5109 nt5.06□□□□□ -1.62e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-258ENST00000642034 4132 nt5□□□□□ -1.612e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-236ENST00000641509 4050 ntBASIC4.99□□□□□ -1.612e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-248ENST00000641774 4247 nt4.86□□□□□ -1.632e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-233ENST00000641482 4860 ntBASIC4.57□□□□□ -1.682e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-255ENST00000641928 4083 nt4.57□□□□□ -1.682e-6■■■□□ 16.1
U2AF1Q01081 MFSD8-210ENST00000641025 4261 nt4.42□□□□□ -1.72e-6■■■□□ 16.1
U2AF1Q01081 TOX3-205ENST00000568436 548 ntTSL 325.86■■□□□ 1.731e-6■■■□□ 16.1
U2AF1Q01081 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC19.47■□□□□ 0.711e-6■■■□□ 16.1
U2AF1Q01081 SRSF1-207ENST00000584668 758 ntTSL 311.21□□□□□ -0.611e-7■■■□□ 16.1
U2AF1Q01081 HNMT-206ENST00000475675 743 ntTSL 311□□□□□ -0.651e-7■■■□□ 16.1
U2AF1Q01081 HNMT-207ENST00000480534 339 ntTSL 38.37□□□□□ -1.071e-7■■■□□ 16.1
U2AF1Q01081 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC7.39□□□□□ -1.231e-7■■■□□ 16.1
U2AF1Q01081 HNMT-205ENST00000467390 532 ntTSL 26.96□□□□□ -1.31e-7■■■□□ 16.1
U2AF1Q01081 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.471e-7■■■□□ 16.1
U2AF1Q01081 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.481e-7■■■□□ 16.1
U2AF1Q01081 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.54□□□□□ -1.521e-7■■■□□ 16.1
U2AF1Q01081 HNMT-208ENST00000485653 675 ntTSL 53.88□□□□□ -1.791e-7■■■□□ 16.1
U2AF1Q01081 DDX5-209ENST00000578758 667 ntTSL 213.15□□□□□ -0.34e-8■■■□□ 16
U2AF1Q01081 AC079781.5-201ENST00000641390 3211 nt23.4■■□□□ 1.349e-8■■■□□ 16
U2AF1Q01081 AC079781.5-202ENST00000641784 3743 ntBASIC17.99■□□□□ 0.479e-8■■■□□ 16
U2AF1Q01081 LUC7L-218ENST00000494366 668 ntTSL 325.15■■□□□ 1.627e-16■■■□□ 16
U2AF1Q01081 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.537e-16■■■□□ 16
U2AF1Q01081 LUC7L-207ENST00000426094 2737 ntTSL 1 (best)24.49■■□□□ 1.517e-16■■■□□ 16
U2AF1Q01081 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC24.35■■□□□ 1.497e-16■■■□□ 16
U2AF1Q01081 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC23.52■■□□□ 1.367e-16■■■□□ 16
Retrieved 100 of 10,096 protein–RNA pairs in 81.1 ms