Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.75■□□□□ 0.43
Clrn1Q8K445 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Clrn1Q8K445 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn1Q8K445 Gm18688-201ENSMUST00000204695 1859 ntBASIC17.75■□□□□ 0.43
Clrn1Q8K445 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn1Q8K445 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn1Q8K445 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn1Q8K445 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn1Q8K445 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn1Q8K445 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Clrn1Q8K445 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.74■□□□□ 0.43
Clrn1Q8K445 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn1Q8K445 Gm10616-201ENSMUST00000205285 2127 ntBASIC17.74■□□□□ 0.43
Clrn1Q8K445 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn1Q8K445 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn1Q8K445 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn1Q8K445 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn1Q8K445 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn1Q8K445 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn1Q8K445 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC17.74■□□□□ 0.43
Clrn1Q8K445 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.74■□□□□ 0.43
Clrn1Q8K445 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.74■□□□□ 0.43
Clrn1Q8K445 Gm42778-201ENSMUST00000199644 553 ntBASIC17.74■□□□□ 0.43
Clrn1Q8K445 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.74■□□□□ 0.43
Clrn1Q8K445 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn1Q8K445 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn1Q8K445 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn1Q8K445 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn1Q8K445 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn1Q8K445 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn1Q8K445 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Clrn1Q8K445 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn1Q8K445 Gm15039-201ENSMUST00000118914 875 ntBASIC17.73■□□□□ 0.43
Clrn1Q8K445 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
Clrn1Q8K445 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.73■□□□□ 0.43
Clrn1Q8K445 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn1Q8K445 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Clrn1Q8K445 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17.73■□□□□ 0.43
Clrn1Q8K445 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn1Q8K445 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn1Q8K445 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn1Q8K445 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn1Q8K445 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Clrn1Q8K445 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC17.72■□□□□ 0.43
Clrn1Q8K445 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clrn1Q8K445 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Clrn1Q8K445 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Clrn1Q8K445 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clrn1Q8K445 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Clrn1Q8K445 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clrn1Q8K445 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clrn1Q8K445 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clrn1Q8K445 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clrn1Q8K445 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.71■□□□□ 0.43
Clrn1Q8K445 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clrn1Q8K445 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Clrn1Q8K445 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Clrn1Q8K445 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Clrn1Q8K445 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Clrn1Q8K445 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clrn1Q8K445 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.7■□□□□ 0.42
Clrn1Q8K445 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Clrn1Q8K445 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Gm5874-201ENSMUST00000096101 508 ntBASIC17.7■□□□□ 0.42
Clrn1Q8K445 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Clrn1Q8K445 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clrn1Q8K445 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clrn1Q8K445 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clrn1Q8K445 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clrn1Q8K445 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clrn1Q8K445 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clrn1Q8K445 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clrn1Q8K445 Gm13234-201ENSMUST00000120010 747 ntBASIC17.69■□□□□ 0.42
Clrn1Q8K445 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC17.69■□□□□ 0.42
Clrn1Q8K445 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Clrn1Q8K445 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms