Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim40Q3UWA4 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.42
Trim40Q3UWA4 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
Trim40Q3UWA4 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim40Q3UWA4 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Trim40Q3UWA4 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Trim40Q3UWA4 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Trim40Q3UWA4 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim40Q3UWA4 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim40Q3UWA4 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim40Q3UWA4 Gm5522-201ENSMUST00000189483 1242 ntBASIC17.64■□□□□ 0.41
Trim40Q3UWA4 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim40Q3UWA4 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim40Q3UWA4 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.64■□□□□ 0.41
Trim40Q3UWA4 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim40Q3UWA4 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Etf1-202ENSMUST00000180351 108 ntBASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Gm10657-201ENSMUST00000193528 1031 ntBASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim40Q3UWA4 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim40Q3UWA4 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim40Q3UWA4 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC17.62■□□□□ 0.41
Trim40Q3UWA4 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim40Q3UWA4 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim40Q3UWA4 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim40Q3UWA4 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim40Q3UWA4 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Trim40Q3UWA4 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim40Q3UWA4 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim40Q3UWA4 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim40Q3UWA4 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim40Q3UWA4 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim40Q3UWA4 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms