Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.27■□□□□ 0.84
LIM2P55344 AL137060.1-201ENST00000618151 2648 ntBASIC20.27■□□□□ 0.84
LIM2P55344 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIM2P55344 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.27■□□□□ 0.84
LIM2P55344 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.27■□□□□ 0.84
LIM2P55344 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.27■□□□□ 0.84
LIM2P55344 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIM2P55344 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
LIM2P55344 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIM2P55344 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIM2P55344 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LIM2P55344 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
LIM2P55344 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIM2P55344 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LIM2P55344 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LIM2P55344 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.26■□□□□ 0.83
LIM2P55344 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LIM2P55344 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.26■□□□□ 0.83
LIM2P55344 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LIM2P55344 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIM2P55344 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIM2P55344 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
LIM2P55344 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIM2P55344 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.25■□□□□ 0.83
LIM2P55344 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIM2P55344 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
LIM2P55344 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.25■□□□□ 0.83
LIM2P55344 TPRG1LP1-201ENST00000598702 760 ntBASIC20.25■□□□□ 0.83
LIM2P55344 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.25■□□□□ 0.83
LIM2P55344 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.25■□□□□ 0.83
LIM2P55344 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
LIM2P55344 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIM2P55344 AC005224.4-201ENST00000583262 1652 ntBASIC20.25■□□□□ 0.83
LIM2P55344 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIM2P55344 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
LIM2P55344 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.25■□□□□ 0.83
LIM2P55344 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIM2P55344 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIM2P55344 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIM2P55344 AP006587.3-201ENST00000525742 1516 ntBASIC20.24■□□□□ 0.83
LIM2P55344 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIM2P55344 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIM2P55344 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIM2P55344 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIM2P55344 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.24■□□□□ 0.83
LIM2P55344 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.24■□□□□ 0.83
LIM2P55344 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIM2P55344 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.24■□□□□ 0.83
LIM2P55344 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.24■□□□□ 0.83
LIM2P55344 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIM2P55344 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
LIM2P55344 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIM2P55344 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.24■□□□□ 0.83
LIM2P55344 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIM2P55344 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
LIM2P55344 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.23■□□□□ 0.83
LIM2P55344 AC026471.6-201ENST00000622954 1905 ntBASIC20.23■□□□□ 0.83
LIM2P55344 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LIM2P55344 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.23■□□□□ 0.83
LIM2P55344 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIM2P55344 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LIM2P55344 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.23■□□□□ 0.83
LIM2P55344 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIM2P55344 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.23■□□□□ 0.83
LIM2P55344 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
LIM2P55344 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIM2P55344 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LIM2P55344 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.22■□□□□ 0.83
LIM2P55344 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LIM2P55344 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIM2P55344 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIM2P55344 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIM2P55344 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LIM2P55344 YBX1P1-201ENST00000445822 960 ntBASIC20.22■□□□□ 0.83
LIM2P55344 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.22■□□□□ 0.83
LIM2P55344 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIM2P55344 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
LIM2P55344 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.22■□□□□ 0.83
LIM2P55344 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIM2P55344 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIM2P55344 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LIM2P55344 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LIM2P55344 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIM2P55344 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIM2P55344 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LIM2P55344 AC055733.4-201ENST00000638462 1354 ntBASIC20.21■□□□□ 0.83
LIM2P55344 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
LIM2P55344 AC123595.1-201ENST00000440769 1046 ntBASIC20.21■□□□□ 0.83
LIM2P55344 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.21■□□□□ 0.83
LIM2P55344 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
LIM2P55344 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LIM2P55344 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.21■□□□□ 0.83
LIM2P55344 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIM2P55344 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.21■□□□□ 0.83
LIM2P55344 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.21■□□□□ 0.83
LIM2P55344 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIM2P55344 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.21■□□□□ 0.83
LIM2P55344 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.2■□□□□ 0.82
LIM2P55344 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIM2P55344 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms