Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.43■□□□□ 0.86
SEMA3DO95025 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SEMA3DO95025 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SEMA3DO95025 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SEMA3DO95025 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SEMA3DO95025 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.43■□□□□ 0.86
SEMA3DO95025 SUDS3P1-201ENST00000505831 966 ntBASIC20.43■□□□□ 0.86
SEMA3DO95025 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.43■□□□□ 0.86
SEMA3DO95025 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SEMA3DO95025 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SEMA3DO95025 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.43■□□□□ 0.86
SEMA3DO95025 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.43■□□□□ 0.86
SEMA3DO95025 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
SEMA3DO95025 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.42■□□□□ 0.86
SEMA3DO95025 AC244015.2-201ENST00000616358 1861 ntBASIC20.42■□□□□ 0.86
SEMA3DO95025 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SEMA3DO95025 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.42■□□□□ 0.86
SEMA3DO95025 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SEMA3DO95025 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SEMA3DO95025 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
SEMA3DO95025 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SEMA3DO95025 SLC25A24-204ENST00000569674 2357 ntBASIC20.42■□□□□ 0.86
SEMA3DO95025 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SEMA3DO95025 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.41■□□□□ 0.86
SEMA3DO95025 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.41■□□□□ 0.86
SEMA3DO95025 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SEMA3DO95025 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SEMA3DO95025 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
SEMA3DO95025 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SEMA3DO95025 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SEMA3DO95025 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SEMA3DO95025 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.41■□□□□ 0.86
SEMA3DO95025 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SEMA3DO95025 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SEMA3DO95025 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SEMA3DO95025 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SEMA3DO95025 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
SEMA3DO95025 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SEMA3DO95025 MIR572-201ENST00000384983 95 ntBASIC20.4■□□□□ 0.86
SEMA3DO95025 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.4■□□□□ 0.86
SEMA3DO95025 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.4■□□□□ 0.86
SEMA3DO95025 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SEMA3DO95025 AC104564.3-201ENST00000582367 638 ntBASIC20.4■□□□□ 0.86
SEMA3DO95025 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SEMA3DO95025 AC026471.6-201ENST00000622954 1905 ntBASIC20.39■□□□□ 0.86
SEMA3DO95025 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SEMA3DO95025 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.39■□□□□ 0.85
SEMA3DO95025 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.39■□□□□ 0.85
SEMA3DO95025 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
SEMA3DO95025 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.39■□□□□ 0.85
SEMA3DO95025 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.39■□□□□ 0.85
SEMA3DO95025 AC105233.4-201ENST00000642045 216 ntBASIC20.39■□□□□ 0.85
SEMA3DO95025 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
SEMA3DO95025 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SEMA3DO95025 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.39■□□□□ 0.85
SEMA3DO95025 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SEMA3DO95025 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.38■□□□□ 0.85
SEMA3DO95025 AP006587.3-201ENST00000525742 1516 ntBASIC20.38■□□□□ 0.85
SEMA3DO95025 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SEMA3DO95025 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SEMA3DO95025 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SEMA3DO95025 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
SEMA3DO95025 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SEMA3DO95025 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.38■□□□□ 0.85
SEMA3DO95025 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SEMA3DO95025 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SEMA3DO95025 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.38■□□□□ 0.85
SEMA3DO95025 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.38■□□□□ 0.85
SEMA3DO95025 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SEMA3DO95025 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.38■□□□□ 0.85
SEMA3DO95025 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEMA3DO95025 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SEMA3DO95025 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEMA3DO95025 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEMA3DO95025 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.37■□□□□ 0.85
SEMA3DO95025 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEMA3DO95025 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.37■□□□□ 0.85
SEMA3DO95025 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEMA3DO95025 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.37■□□□□ 0.85
SEMA3DO95025 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEMA3DO95025 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
SEMA3DO95025 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SEMA3DO95025 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEMA3DO95025 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEMA3DO95025 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SEMA3DO95025 AC009237.3-201ENST00000393279 1427 ntBASIC20.36■□□□□ 0.85
SEMA3DO95025 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.36■□□□□ 0.85
SEMA3DO95025 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.36■□□□□ 0.85
SEMA3DO95025 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.36■□□□□ 0.85
SEMA3DO95025 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.36■□□□□ 0.85
SEMA3DO95025 AC142381.2-201ENST00000566120 298 ntBASIC20.36■□□□□ 0.85
SEMA3DO95025 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.36■□□□□ 0.85
SEMA3DO95025 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SEMA3DO95025 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.36■□□□□ 0.85
SEMA3DO95025 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
SEMA3DO95025 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
SEMA3DO95025 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SEMA3DO95025 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEMA3DO95025 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SEMA3DO95025 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms