Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Lmx1bO88609 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
Lmx1bO88609 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lmx1bO88609 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lmx1bO88609 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lmx1bO88609 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Lmx1bO88609 Gm10655-201ENSMUST00000098658 1397 ntBASIC17.01■□□□□ 0.31
Lmx1bO88609 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lmx1bO88609 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Lmx1bO88609 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lmx1bO88609 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17■□□□□ 0.31
Lmx1bO88609 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC17■□□□□ 0.31
Lmx1bO88609 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17■□□□□ 0.31
Lmx1bO88609 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC17■□□□□ 0.31
Lmx1bO88609 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lmx1bO88609 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lmx1bO88609 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Lmx1bO88609 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lmx1bO88609 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC17■□□□□ 0.31
Lmx1bO88609 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC17■□□□□ 0.31
Lmx1bO88609 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lmx1bO88609 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lmx1bO88609 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Lmx1bO88609 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lmx1bO88609 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lmx1bO88609 Gm13148-201ENSMUST00000118892 745 ntBASIC16.99■□□□□ 0.31
Lmx1bO88609 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC16.99■□□□□ 0.31
Lmx1bO88609 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Lmx1bO88609 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lmx1bO88609 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lmx1bO88609 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lmx1bO88609 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC16.99■□□□□ 0.31
Lmx1bO88609 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lmx1bO88609 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lmx1bO88609 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lmx1bO88609 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Lmx1bO88609 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Lmx1bO88609 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
Lmx1bO88609 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lmx1bO88609 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lmx1bO88609 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
Lmx1bO88609 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Lmx1bO88609 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC16.98■□□□□ 0.31
Lmx1bO88609 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC16.98■□□□□ 0.31
Lmx1bO88609 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC16.98■□□□□ 0.31
Lmx1bO88609 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lmx1bO88609 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lmx1bO88609 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lmx1bO88609 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Lmx1bO88609 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Lmx1bO88609 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lmx1bO88609 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC16.97■□□□□ 0.31
Lmx1bO88609 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC16.97■□□□□ 0.31
Lmx1bO88609 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
Lmx1bO88609 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lmx1bO88609 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
Lmx1bO88609 Gm32699-201ENSMUST00000221728 1988 ntBASIC16.97■□□□□ 0.31
Lmx1bO88609 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC16.96■□□□□ 0.31
Lmx1bO88609 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC16.96■□□□□ 0.31
Lmx1bO88609 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lmx1bO88609 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Lmx1bO88609 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Lmx1bO88609 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lmx1bO88609 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lmx1bO88609 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lmx1bO88609 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Lmx1bO88609 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Lmx1bO88609 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lmx1bO88609 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Lmx1bO88609 Golph3-205ENSMUST00000228671 2842 ntBASIC16.96■□□□□ 0.3
Lmx1bO88609 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Lmx1bO88609 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC16.96■□□□□ 0.3
Lmx1bO88609 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Lmx1bO88609 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lmx1bO88609 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
Lmx1bO88609 Gm12441-201ENSMUST00000121806 588 ntBASIC16.95■□□□□ 0.3
Lmx1bO88609 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
Lmx1bO88609 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lmx1bO88609 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lmx1bO88609 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lmx1bO88609 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lmx1bO88609 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Lmx1bO88609 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lmx1bO88609 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC16.95■□□□□ 0.3
Lmx1bO88609 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Lmx1bO88609 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lmx1bO88609 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms