Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PCDHB3Q9Y5E6 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHB3Q9Y5E6 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
PCDHB3Q9Y5E6 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.92■□□□□ 0.94
PCDHB3Q9Y5E6 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PCDHB3Q9Y5E6 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHB3Q9Y5E6 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHB3Q9Y5E6 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHB3Q9Y5E6 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.92■□□□□ 0.94
PCDHB3Q9Y5E6 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 AC004687.1-201ENST00000579003 1625 ntBASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 IKBKGP1-201ENST00000612193 1073 ntBASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB3Q9Y5E6 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 FBXW4P1-201ENST00000426721 2239 ntBASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 DUX4L2-201ENST00000561772 1275 ntBASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 MIR6084-201ENST00000622012 110 ntBASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 DUX4L6-201ENST00000626483 1275 ntBASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 DUX4L1-201ENST00000627662 1275 ntBASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 DUX4L8-201ENST00000629013 1275 ntBASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 DUX4L3-201ENST00000630187 1275 ntBASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 DUX4L7-201ENST00000630678 1275 ntBASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 DUX4L5-201ENST00000630834 1275 ntBASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 AL031602.1-201ENST00000633169 911 ntBASIC20.9■□□□□ 0.94
PCDHB3Q9Y5E6 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.94
PCDHB3Q9Y5E6 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PCDHB3Q9Y5E6 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.89■□□□□ 0.94
PCDHB3Q9Y5E6 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PCDHB3Q9Y5E6 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
PCDHB3Q9Y5E6 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.89■□□□□ 0.94
PCDHB3Q9Y5E6 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
PCDHB3Q9Y5E6 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.89■□□□□ 0.93
PCDHB3Q9Y5E6 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.89■□□□□ 0.93
PCDHB3Q9Y5E6 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.89■□□□□ 0.93
PCDHB3Q9Y5E6 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.89■□□□□ 0.93
PCDHB3Q9Y5E6 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHB3Q9Y5E6 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.89■□□□□ 0.93
PCDHB3Q9Y5E6 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHB3Q9Y5E6 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHB3Q9Y5E6 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHB3Q9Y5E6 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.89■□□□□ 0.93
PCDHB3Q9Y5E6 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHB3Q9Y5E6 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHB3Q9Y5E6 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 AC105233.4-201ENST00000642045 216 ntBASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB3Q9Y5E6 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB3Q9Y5E6 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB3Q9Y5E6 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB3Q9Y5E6 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
PCDHB3Q9Y5E6 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB3Q9Y5E6 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
PCDHB3Q9Y5E6 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB3Q9Y5E6 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB3Q9Y5E6 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.86■□□□□ 0.93
PCDHB3Q9Y5E6 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB3Q9Y5E6 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms