Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Gm12933-201ENSMUST00000120203 872 ntBASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Gm10602-201ENSMUST00000098239 609 ntBASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Notumos-201ENSMUST00000151998 2659 ntBASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim47Q8C0E3 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.95
Trim47Q8C0E3 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim47Q8C0E3 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim47Q8C0E3 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim47Q8C0E3 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim47Q8C0E3 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.95■□□□□ 0.94
Trim47Q8C0E3 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trim47Q8C0E3 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC20.95■□□□□ 0.94
Trim47Q8C0E3 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Trim47Q8C0E3 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.95■□□□□ 0.94
Trim47Q8C0E3 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trim47Q8C0E3 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim47Q8C0E3 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim47Q8C0E3 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim47Q8C0E3 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim47Q8C0E3 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.94■□□□□ 0.94
Trim47Q8C0E3 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
Trim47Q8C0E3 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim47Q8C0E3 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Trim47Q8C0E3 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim47Q8C0E3 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim47Q8C0E3 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim47Q8C0E3 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim47Q8C0E3 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim47Q8C0E3 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.93■□□□□ 0.94
Trim47Q8C0E3 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim47Q8C0E3 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim47Q8C0E3 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim47Q8C0E3 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim47Q8C0E3 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim47Q8C0E3 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Trim47Q8C0E3 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim47Q8C0E3 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim47Q8C0E3 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC20.92■□□□□ 0.94
Trim47Q8C0E3 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.92■□□□□ 0.94
Trim47Q8C0E3 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim47Q8C0E3 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim47Q8C0E3 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim47Q8C0E3 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim47Q8C0E3 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim47Q8C0E3 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim47Q8C0E3 Gm13148-201ENSMUST00000118892 745 ntBASIC20.91■□□□□ 0.94
Trim47Q8C0E3 Mir5133-201ENSMUST00000174955 77 ntBASIC20.91■□□□□ 0.94
Trim47Q8C0E3 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim47Q8C0E3 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Trim47Q8C0E3 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim47Q8C0E3 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.91■□□□□ 0.94
Trim47Q8C0E3 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim47Q8C0E3 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim47Q8C0E3 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Trim47Q8C0E3 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim47Q8C0E3 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.9■□□□□ 0.94
Trim47Q8C0E3 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim47Q8C0E3 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim47Q8C0E3 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim47Q8C0E3 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim47Q8C0E3 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim47Q8C0E3 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim47Q8C0E3 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim47Q8C0E3 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim47Q8C0E3 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim47Q8C0E3 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim47Q8C0E3 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim47Q8C0E3 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trim47Q8C0E3 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim47Q8C0E3 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim47Q8C0E3 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms