Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Tpm1P58771 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Tpm1P58771 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Tpm1P58771 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Tpm1P58771 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Tpm1P58771 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
Tpm1P58771 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Tpm1P58771 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Tpm1P58771 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Tpm1P58771 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Tpm1P58771 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Tpm1P58771 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Tpm1P58771 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.07■□□□□ 0.96
Tpm1P58771 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.06■□□□□ 0.96
Tpm1P58771 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Tpm1P58771 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Tpm1P58771 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Tpm1P58771 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Tpm1P58771 Gm45141-201ENSMUST00000206502 1888 ntBASIC21.05■□□□□ 0.96
Tpm1P58771 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Tpm1P58771 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Tpm1P58771 BC021767-201ENSMUST00000126387 1716 ntBASIC21.05■□□□□ 0.96
Tpm1P58771 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Tpm1P58771 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.05■□□□□ 0.96
Tpm1P58771 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Tpm1P58771 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Tpm1P58771 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Tpm1P58771 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Tpm1P58771 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Tpm1P58771 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Tpm1P58771 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Tpm1P58771 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Tpm1P58771 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Tpm1P58771 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.04■□□□□ 0.96
Tpm1P58771 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Tpm1P58771 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.04■□□□□ 0.96
Tpm1P58771 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Tpm1P58771 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Tpm1P58771 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Tpm1P58771 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Tpm1P58771 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Tpm1P58771 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Tpm1P58771 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.04■□□□□ 0.96
Tpm1P58771 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
Tpm1P58771 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Tpm1P58771 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Tpm1P58771 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.03■□□□□ 0.96
Tpm1P58771 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC21.03■□□□□ 0.96
Tpm1P58771 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Tpm1P58771 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Tpm1P58771 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Tpm1P58771 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Tpm1P58771 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Tpm1P58771 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Tpm1P58771 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Tpm1P58771 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Tpm1P58771 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
Tpm1P58771 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.02■□□□□ 0.96
Tpm1P58771 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Tpm1P58771 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Tpm1P58771 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Tpm1P58771 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC21.02■□□□□ 0.96
Tpm1P58771 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Tpm1P58771 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Tpm1P58771 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Tpm1P58771 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Tpm1P58771 Gm18688-201ENSMUST00000204695 1859 ntBASIC21.01■□□□□ 0.95
Tpm1P58771 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Tpm1P58771 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Tpm1P58771 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Tpm1P58771 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC21.01■□□□□ 0.95
Tpm1P58771 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Tpm1P58771 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Tpm1P58771 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Tpm1P58771 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Tpm1P58771 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Tpm1P58771 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Tpm1P58771 Gm8770-201ENSMUST00000121113 1109 ntBASIC21■□□□□ 0.95
Tpm1P58771 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21■□□□□ 0.95
Tpm1P58771 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Tpm1P58771 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Tpm1P58771 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Tpm1P58771 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Tpm1P58771 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Tpm1P58771 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Tpm1P58771 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Tpm1P58771 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Tpm1P58771 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms