Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC18.1■□□□□ 0.49
USF1P22415 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
USF1P22415 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USF1P22415 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.09■□□□□ 0.49
USF1P22415 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
USF1P22415 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USF1P22415 C9orf163-202ENST00000624034 2573 ntBASIC18.09■□□□□ 0.49
USF1P22415 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.09■□□□□ 0.49
USF1P22415 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USF1P22415 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USF1P22415 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
USF1P22415 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USF1P22415 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
USF1P22415 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USF1P22415 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USF1P22415 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.09■□□□□ 0.49
USF1P22415 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USF1P22415 AL109923.1-201ENST00000618799 583 ntBASIC18.09■□□□□ 0.49
USF1P22415 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USF1P22415 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.09■□□□□ 0.49
USF1P22415 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.09■□□□□ 0.49
USF1P22415 CLDN5-201ENST00000403084 2357 ntBASIC18.09■□□□□ 0.49
USF1P22415 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USF1P22415 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
USF1P22415 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.08■□□□□ 0.48
USF1P22415 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.08■□□□□ 0.48
USF1P22415 CROCCP5-201ENST00000436658 830 ntBASIC18.08■□□□□ 0.48
USF1P22415 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.08■□□□□ 0.48
USF1P22415 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
USF1P22415 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USF1P22415 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
USF1P22415 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.08■□□□□ 0.48
USF1P22415 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USF1P22415 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
USF1P22415 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
USF1P22415 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
USF1P22415 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC18.07■□□□□ 0.48
USF1P22415 AC009237.3-201ENST00000393279 1427 ntBASIC18.07■□□□□ 0.48
USF1P22415 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
USF1P22415 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
USF1P22415 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USF1P22415 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
USF1P22415 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
USF1P22415 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.07■□□□□ 0.48
USF1P22415 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USF1P22415 AL355802.2-201ENST00000402069 882 ntBASIC18.07■□□□□ 0.48
USF1P22415 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.07■□□□□ 0.48
USF1P22415 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.07■□□□□ 0.48
USF1P22415 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.07■□□□□ 0.48
USF1P22415 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
USF1P22415 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USF1P22415 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
USF1P22415 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.07■□□□□ 0.48
USF1P22415 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USF1P22415 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
USF1P22415 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USF1P22415 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USF1P22415 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USF1P22415 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
USF1P22415 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USF1P22415 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USF1P22415 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USF1P22415 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USF1P22415 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USF1P22415 NCF1B-203ENST00000435988 1254 ntBASIC18.06■□□□□ 0.48
USF1P22415 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.06■□□□□ 0.48
USF1P22415 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USF1P22415 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
USF1P22415 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.06■□□□□ 0.48
USF1P22415 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.06■□□□□ 0.48
USF1P22415 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USF1P22415 AC005224.4-201ENST00000583262 1652 ntBASIC18.06■□□□□ 0.48
USF1P22415 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USF1P22415 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USF1P22415 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USF1P22415 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.05■□□□□ 0.48
USF1P22415 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USF1P22415 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
USF1P22415 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
USF1P22415 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.05■□□□□ 0.48
USF1P22415 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USF1P22415 MIR663A-201ENST00000385250 93 ntBASIC18.05■□□□□ 0.48
USF1P22415 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.05■□□□□ 0.48
USF1P22415 KRT87P-202ENST00000534226 1464 ntBASIC18.05■□□□□ 0.48
USF1P22415 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.05■□□□□ 0.48
USF1P22415 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USF1P22415 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
USF1P22415 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
USF1P22415 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USF1P22415 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USF1P22415 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USF1P22415 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USF1P22415 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USF1P22415 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
USF1P22415 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USF1P22415 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
USF1P22415 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
USF1P22415 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USF1P22415 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
USF1P22415 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms