Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx1P18111 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Cdx1P18111 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Cdx1P18111 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx1P18111 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx1P18111 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx1P18111 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC15.15■□□□□ 0.02
Cdx1P18111 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Cdx1P18111 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC15.15■□□□□ 0.02
Cdx1P18111 Gm27454-201ENSMUST00000185090 204 ntBASIC15.15■□□□□ 0.02
Cdx1P18111 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx1P18111 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx1P18111 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Cdx1P18111 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx1P18111 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx1P18111 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx1P18111 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC15.15■□□□□ 0.02
Cdx1P18111 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Cdx1P18111 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdx1P18111 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx1P18111 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Cdx1P18111 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx1P18111 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx1P18111 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC15.14■□□□□ 0.01
Cdx1P18111 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx1P18111 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Cdx1P18111 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx1P18111 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC15.14■□□□□ 0.01
Cdx1P18111 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC15.14■□□□□ 0.01
Cdx1P18111 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx1P18111 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC15.14■□□□□ 0.01
Cdx1P18111 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx1P18111 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx1P18111 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx1P18111 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx1P18111 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx1P18111 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdx1P18111 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Cdx1P18111 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx1P18111 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC15.13■□□□□ 0.01
Cdx1P18111 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx1P18111 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Cdx1P18111 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cdx1P18111 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx1P18111 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Cdx1P18111 Gm6802-201ENSMUST00000167843 1983 ntBASIC15.13■□□□□ 0.01
Cdx1P18111 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cdx1P18111 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdx1P18111 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Cdx1P18111 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Cdx1P18111 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC15.12■□□□□ 0.01
Cdx1P18111 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 AC116713.1-201ENSMUST00000215074 430 ntBASIC15.12■□□□□ 0.01
Cdx1P18111 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Cdx1P18111 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdx1P18111 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC15.12■□□□□ 0.01
Cdx1P18111 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx1P18111 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC15.11■□□□□ 0.01
Cdx1P18111 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx1P18111 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx1P18111 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx1P18111 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC15.11■□□□□ 0.01
Cdx1P18111 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx1P18111 Serp2-204ENSMUST00000228055 705 ntBASIC15.11■□□□□ 0.01
Cdx1P18111 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx1P18111 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx1P18111 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx1P18111 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
Cdx1P18111 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx1P18111 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx1P18111 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx1P18111 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdx1P18111 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Cdx1P18111 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx1P18111 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx1P18111 Gm43909-201ENSMUST00000203443 1876 ntBASIC15.1■□□□□ 0.01
Cdx1P18111 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx1P18111 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx1P18111 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Cdx1P18111 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Cdx1P18111 Gm45417-201ENSMUST00000209533 758 ntBASIC15.1■□□□□ 0.01
Cdx1P18111 Gm45244-201ENSMUST00000211328 2200 ntBASIC15.1■□□□□ 0.01
Cdx1P18111 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx1P18111 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx1P18111 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdx1P18111 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms