Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Shroom3Q9QXN0 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.05■□□□□ 0.64
Shroom3Q9QXN0 Gm10602-201ENSMUST00000098239 609 ntBASIC19.04■□□□□ 0.64
Shroom3Q9QXN0 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shroom3Q9QXN0 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shroom3Q9QXN0 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Shroom3Q9QXN0 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC19.04■□□□□ 0.64
Shroom3Q9QXN0 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Shroom3Q9QXN0 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shroom3Q9QXN0 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shroom3Q9QXN0 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shroom3Q9QXN0 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Shroom3Q9QXN0 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
Shroom3Q9QXN0 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Shroom3Q9QXN0 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Shroom3Q9QXN0 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Shroom3Q9QXN0 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Shroom3Q9QXN0 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Shroom3Q9QXN0 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Shroom3Q9QXN0 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Shroom3Q9QXN0 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Nespas-201ENSMUST00000143738 1083 ntBASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Gm38205-201ENSMUST00000192243 258 ntBASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Shroom3Q9QXN0 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.02■□□□□ 0.63
Shroom3Q9QXN0 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Shroom3Q9QXN0 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Shroom3Q9QXN0 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Gm12441-201ENSMUST00000121806 588 ntBASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Shroom3Q9QXN0 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Shroom3Q9QXN0 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Shroom3Q9QXN0 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Shroom3Q9QXN0 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Shroom3Q9QXN0 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19■□□□□ 0.63
Shroom3Q9QXN0 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Shroom3Q9QXN0 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Shroom3Q9QXN0 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Shroom3Q9QXN0 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Shroom3Q9QXN0 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19■□□□□ 0.63
Shroom3Q9QXN0 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Shroom3Q9QXN0 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Shroom3Q9QXN0 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms