Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim35Q8C006 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.31■□□□□ 0.68
Trim35Q8C006 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim35Q8C006 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim35Q8C006 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
Trim35Q8C006 AC154517.1-201ENSMUST00000222785 629 ntTSL 3 BASIC19.31■□□□□ 0.68
Trim35Q8C006 Gm7745-202ENSMUST00000222914 567 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim35Q8C006 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.31■□□□□ 0.68
Trim35Q8C006 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim35Q8C006 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim35Q8C006 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim35Q8C006 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim35Q8C006 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim35Q8C006 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim35Q8C006 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim35Q8C006 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim35Q8C006 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim35Q8C006 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
Trim35Q8C006 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
Trim35Q8C006 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim35Q8C006 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC19.3■□□□□ 0.68
Trim35Q8C006 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Trim35Q8C006 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim35Q8C006 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim35Q8C006 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC19.3■□□□□ 0.68
Trim35Q8C006 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Trim35Q8C006 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim35Q8C006 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim35Q8C006 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim35Q8C006 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim35Q8C006 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim35Q8C006 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim35Q8C006 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim35Q8C006 AC102542.1-201ENSMUST00000225204 1138 ntBASIC19.29■□□□□ 0.68
Trim35Q8C006 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
Trim35Q8C006 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trim35Q8C006 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trim35Q8C006 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.28■□□□□ 0.68
Trim35Q8C006 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim35Q8C006 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim35Q8C006 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.28■□□□□ 0.68
Trim35Q8C006 Gm14740-201ENSMUST00000118538 1150 ntBASIC19.28■□□□□ 0.68
Trim35Q8C006 Gm6358-202ENSMUST00000187643 489 ntAPPRIS P5 BASIC19.28■□□□□ 0.68
Trim35Q8C006 Gm45166-201ENSMUST00000209073 683 ntBASIC19.28■□□□□ 0.68
Trim35Q8C006 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim35Q8C006 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.28■□□□□ 0.68
Trim35Q8C006 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim35Q8C006 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC19.27■□□□□ 0.68
Trim35Q8C006 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 9030204H09Rik-201ENSMUST00000139455 653 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 Gm21147-201ENSMUST00000186046 913 ntBASIC19.27■□□□□ 0.68
Trim35Q8C006 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim35Q8C006 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
Trim35Q8C006 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19.26■□□□□ 0.67
Trim35Q8C006 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Trim35Q8C006 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Gm28925-201ENSMUST00000188586 168 ntBASIC19.26■□□□□ 0.67
Trim35Q8C006 Rnf212-202ENSMUST00000196652 853 ntTSL 2 BASIC19.26■□□□□ 0.67
Trim35Q8C006 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Trim35Q8C006 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC19.26■□□□□ 0.67
Trim35Q8C006 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
Trim35Q8C006 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim35Q8C006 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Trim35Q8C006 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
Trim35Q8C006 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim35Q8C006 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim35Q8C006 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Trim35Q8C006 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
Trim35Q8C006 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
Trim35Q8C006 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim35Q8C006 AC114573.1-201ENSMUST00000224120 1210 ntBASIC19.25■□□□□ 0.67
Trim35Q8C006 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim35Q8C006 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim35Q8C006 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim35Q8C006 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Trim35Q8C006 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim35Q8C006 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Trim35Q8C006 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim35Q8C006 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms