Protein–RNA interactions for Protein: Q7TNK1

Rfx4, Transcription factor RFX4, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx4Q7TNK1 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx4Q7TNK1 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx4Q7TNK1 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
Rfx4Q7TNK1 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rfx4Q7TNK1 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
Rfx4Q7TNK1 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
Rfx4Q7TNK1 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Gm44832-201ENSMUST00000208849 2303 ntBASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Gm7856-201ENSMUST00000117514 1493 ntBASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rfx4Q7TNK1 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Gm15853-202ENSMUST00000195518 2041 ntBASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rfx4Q7TNK1 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.18■□□□□ 0.5
Rfx4Q7TNK1 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx4Q7TNK1 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx4Q7TNK1 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx4Q7TNK1 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Rfx4Q7TNK1 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx4Q7TNK1 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx4Q7TNK1 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx4Q7TNK1 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx4Q7TNK1 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rfx4Q7TNK1 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC18.18■□□□□ 0.5
Rfx4Q7TNK1 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.18■□□□□ 0.5
Rfx4Q7TNK1 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Rfx4Q7TNK1 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx4Q7TNK1 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx4Q7TNK1 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms