Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha4O88689 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha4O88689 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdha4O88689 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC21.22■□□□□ 0.99
Pcdha4O88689 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha4O88689 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha4O88689 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha4O88689 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha4O88689 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdha4O88689 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Pcdha4O88689 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha4O88689 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha4O88689 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha4O88689 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha4O88689 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha4O88689 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha4O88689 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Pcdha4O88689 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha4O88689 Slc35b2-207ENSMUST00000226086 850 ntBASIC21.21■□□□□ 0.99
Pcdha4O88689 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha4O88689 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdha4O88689 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC21.21■□□□□ 0.99
Pcdha4O88689 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdha4O88689 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdha4O88689 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC21.2■□□□□ 0.98
Pcdha4O88689 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdha4O88689 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdha4O88689 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdha4O88689 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdha4O88689 Gm10655-201ENSMUST00000098658 1397 ntBASIC21.2■□□□□ 0.98
Pcdha4O88689 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
Pcdha4O88689 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
Pcdha4O88689 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdha4O88689 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdha4O88689 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha4O88689 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha4O88689 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha4O88689 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha4O88689 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha4O88689 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Pcdha4O88689 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC21.19■□□□□ 0.98
Pcdha4O88689 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha4O88689 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.19■□□□□ 0.98
Pcdha4O88689 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha4O88689 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha4O88689 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdha4O88689 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
Pcdha4O88689 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
Pcdha4O88689 AC126028.2-201ENSMUST00000228100 1833 ntBASIC21.18■□□□□ 0.98
Pcdha4O88689 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdha4O88689 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Pcdha4O88689 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdha4O88689 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdha4O88689 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdha4O88689 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdha4O88689 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdha4O88689 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdha4O88689 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha4O88689 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha4O88689 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha4O88689 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha4O88689 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha4O88689 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC21.17■□□□□ 0.98
Pcdha4O88689 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC21.17■□□□□ 0.98
Pcdha4O88689 AC164629.5-201ENSMUST00000220387 632 ntBASIC21.17■□□□□ 0.98
Pcdha4O88689 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha4O88689 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
Pcdha4O88689 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha4O88689 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha4O88689 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha4O88689 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Pcdha4O88689 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha4O88689 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdha4O88689 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdha4O88689 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdha4O88689 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdha4O88689 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdha4O88689 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdha4O88689 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
Pcdha4O88689 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Pcdha4O88689 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdha4O88689 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Pcdha4O88689 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Pcdha4O88689 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Pcdha4O88689 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha4O88689 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC21.15■□□□□ 0.98
Pcdha4O88689 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC21.15■□□□□ 0.98
Pcdha4O88689 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC21.15■□□□□ 0.98
Pcdha4O88689 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha4O88689 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha4O88689 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha4O88689 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Pcdha4O88689 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha4O88689 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha4O88689 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdha4O88689 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Pcdha4O88689 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdha4O88689 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdha4O88689 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC21.14■□□□□ 0.97
Pcdha4O88689 Gm6420-201ENSMUST00000193885 723 ntBASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms