Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PROM1O43490 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.37■□□□□ 0.85
PROM1O43490 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
PROM1O43490 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PROM1O43490 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PROM1O43490 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PROM1O43490 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.37■□□□□ 0.85
PROM1O43490 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.37■□□□□ 0.85
PROM1O43490 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PROM1O43490 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PROM1O43490 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PROM1O43490 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.37■□□□□ 0.85
PROM1O43490 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PROM1O43490 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.36■□□□□ 0.85
PROM1O43490 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.36■□□□□ 0.85
PROM1O43490 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 MIR572-201ENST00000384983 95 ntBASIC20.36■□□□□ 0.85
PROM1O43490 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.36■□□□□ 0.85
PROM1O43490 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.36■□□□□ 0.85
PROM1O43490 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.36■□□□□ 0.85
PROM1O43490 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.36■□□□□ 0.85
PROM1O43490 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.36■□□□□ 0.85
PROM1O43490 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
PROM1O43490 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
PROM1O43490 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PROM1O43490 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PROM1O43490 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PROM1O43490 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PROM1O43490 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
PROM1O43490 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.35■□□□□ 0.85
PROM1O43490 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
PROM1O43490 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PROM1O43490 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PROM1O43490 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PROM1O43490 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PROM1O43490 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.35■□□□□ 0.85
PROM1O43490 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
PROM1O43490 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
PROM1O43490 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PROM1O43490 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
PROM1O43490 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PROM1O43490 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PROM1O43490 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PROM1O43490 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PROM1O43490 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.34■□□□□ 0.85
PROM1O43490 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PROM1O43490 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PROM1O43490 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.34■□□□□ 0.85
PROM1O43490 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.34■□□□□ 0.85
PROM1O43490 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.34■□□□□ 0.85
PROM1O43490 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PROM1O43490 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PROM1O43490 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PROM1O43490 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PROM1O43490 AP004607.7-201ENST00000527152 1677 ntBASIC20.33■□□□□ 0.85
PROM1O43490 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
PROM1O43490 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PROM1O43490 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PROM1O43490 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.85
PROM1O43490 AC105233.4-201ENST00000642045 216 ntBASIC20.33■□□□□ 0.85
PROM1O43490 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PROM1O43490 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PROM1O43490 FAM99A-202ENST00000538190 1989 ntBASIC20.33■□□□□ 0.84
PROM1O43490 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.33■□□□□ 0.84
PROM1O43490 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.33■□□□□ 0.84
PROM1O43490 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PROM1O43490 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.32■□□□□ 0.84
PROM1O43490 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.32■□□□□ 0.84
PROM1O43490 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.32■□□□□ 0.84
PROM1O43490 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.32■□□□□ 0.84
PROM1O43490 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.32■□□□□ 0.84
PROM1O43490 AL034346.1-201ENST00000568244 1277 ntBASIC20.32■□□□□ 0.84
PROM1O43490 AC092666.2-201ENST00000613287 246 ntBASIC20.32■□□□□ 0.84
PROM1O43490 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PROM1O43490 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms