Protein–RNA interactions for Protein: E9Q2N0

Cpsf4l, Cleavage and polyadenylation-specific factor 4-like, mousemouse

Predictions only

Length 280 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4lE9Q2N0 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cpsf4lE9Q2N0 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cpsf4lE9Q2N0 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cpsf4lE9Q2N0 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Cpsf4lE9Q2N0 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Gm42778-201ENSMUST00000199644 553 ntBASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC16.08■□□□□ 0.16
Cpsf4lE9Q2N0 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Cpsf4lE9Q2N0 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC16.07■□□□□ 0.16
Cpsf4lE9Q2N0 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4lE9Q2N0 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4lE9Q2N0 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4lE9Q2N0 AC126028.2-201ENSMUST00000228100 1833 ntBASIC16.07■□□□□ 0.16
Cpsf4lE9Q2N0 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4lE9Q2N0 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4lE9Q2N0 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4lE9Q2N0 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4lE9Q2N0 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Gm10616-201ENSMUST00000205285 2127 ntBASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Gm13146-201ENSMUST00000118508 780 ntBASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Cpsf4lE9Q2N0 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 Gm27032-201ENSMUST00000183124 1116 ntBASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Cpsf4lE9Q2N0 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4lE9Q2N0 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Gm42642-201ENSMUST00000200683 355 ntBASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Gm10033-202ENSMUST00000211874 928 ntBASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4lE9Q2N0 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cpsf4lE9Q2N0 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cpsf4lE9Q2N0 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cpsf4lE9Q2N0 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 11.3 ms