Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
BEST3Q8N1M1 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
BEST3Q8N1M1 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
BEST3Q8N1M1 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.96■□□□□ 0.79
BEST3Q8N1M1 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.96■□□□□ 0.79
BEST3Q8N1M1 AC090192.1-201ENST00000517740 490 ntBASIC19.96■□□□□ 0.79
BEST3Q8N1M1 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.96■□□□□ 0.79
BEST3Q8N1M1 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.96■□□□□ 0.79
BEST3Q8N1M1 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.96■□□□□ 0.79
BEST3Q8N1M1 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
BEST3Q8N1M1 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
BEST3Q8N1M1 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
BEST3Q8N1M1 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
BEST3Q8N1M1 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.95■□□□□ 0.78
BEST3Q8N1M1 AC004854.2-201ENST00000608450 1441 ntBASIC19.95■□□□□ 0.78
BEST3Q8N1M1 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BEST3Q8N1M1 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BEST3Q8N1M1 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
BEST3Q8N1M1 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.95■□□□□ 0.78
BEST3Q8N1M1 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.95■□□□□ 0.78
BEST3Q8N1M1 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
BEST3Q8N1M1 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.95■□□□□ 0.78
BEST3Q8N1M1 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.95■□□□□ 0.78
BEST3Q8N1M1 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
BEST3Q8N1M1 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
BEST3Q8N1M1 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
BEST3Q8N1M1 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 AP004607.4-201ENST00000530158 1459 ntBASIC19.94■□□□□ 0.78
BEST3Q8N1M1 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
BEST3Q8N1M1 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
BEST3Q8N1M1 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BEST3Q8N1M1 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
BEST3Q8N1M1 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.93■□□□□ 0.78
BEST3Q8N1M1 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BEST3Q8N1M1 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
BEST3Q8N1M1 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.93■□□□□ 0.78
BEST3Q8N1M1 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.93■□□□□ 0.78
BEST3Q8N1M1 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
BEST3Q8N1M1 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
BEST3Q8N1M1 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.93■□□□□ 0.78
BEST3Q8N1M1 DUSP8P5-201ENST00000422884 1815 ntBASIC19.92■□□□□ 0.78
BEST3Q8N1M1 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.92■□□□□ 0.78
BEST3Q8N1M1 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BEST3Q8N1M1 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.92■□□□□ 0.78
BEST3Q8N1M1 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BEST3Q8N1M1 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.92■□□□□ 0.78
BEST3Q8N1M1 AC079140.4-201ENST00000507448 529 ntBASIC19.92■□□□□ 0.78
BEST3Q8N1M1 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.92■□□□□ 0.78
BEST3Q8N1M1 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.92■□□□□ 0.78
BEST3Q8N1M1 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BEST3Q8N1M1 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BEST3Q8N1M1 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
BEST3Q8N1M1 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
BEST3Q8N1M1 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
BEST3Q8N1M1 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
BEST3Q8N1M1 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BEST3Q8N1M1 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BEST3Q8N1M1 AC079089.2-201ENST00000531211 1277 ntBASIC19.91■□□□□ 0.78
BEST3Q8N1M1 AC137761.2-201ENST00000561729 223 ntBASIC19.91■□□□□ 0.78
BEST3Q8N1M1 AC145350.3-201ENST00000569033 163 ntBASIC19.91■□□□□ 0.78
BEST3Q8N1M1 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.91■□□□□ 0.78
BEST3Q8N1M1 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
BEST3Q8N1M1 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
BEST3Q8N1M1 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
BEST3Q8N1M1 AC005224.4-201ENST00000583262 1652 ntBASIC19.91■□□□□ 0.78
BEST3Q8N1M1 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
BEST3Q8N1M1 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 AC016769.1-201ENST00000409132 1010 ntBASIC19.9■□□□□ 0.78
BEST3Q8N1M1 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BEST3Q8N1M1 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
BEST3Q8N1M1 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms