Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC22.57■■□□□ 1.2
Trim56Q80VI1 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC22.57■■□□□ 1.2
Trim56Q80VI1 Gm7514-201ENSMUST00000209475 934 ntBASIC22.57■■□□□ 1.2
Trim56Q80VI1 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC22.57■■□□□ 1.2
Trim56Q80VI1 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trim56Q80VI1 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Trim56Q80VI1 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Trim56Q80VI1 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Trim56Q80VI1 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Trim56Q80VI1 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Trim56Q80VI1 Gm27032-201ENSMUST00000183124 1116 ntBASIC22.56■■□□□ 1.2
Trim56Q80VI1 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trim56Q80VI1 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trim56Q80VI1 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trim56Q80VI1 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trim56Q80VI1 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trim56Q80VI1 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Trim56Q80VI1 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trim56Q80VI1 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC22.55■■□□□ 1.2
Trim56Q80VI1 Gm37179-201ENSMUST00000194862 823 ntBASIC22.55■■□□□ 1.2
Trim56Q80VI1 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Trim56Q80VI1 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC22.55■■□□□ 1.2
Trim56Q80VI1 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Trim56Q80VI1 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC22.55■■□□□ 1.2
Trim56Q80VI1 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
Trim56Q80VI1 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trim56Q80VI1 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC22.55■■□□□ 1.2
Trim56Q80VI1 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trim56Q80VI1 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trim56Q80VI1 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trim56Q80VI1 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trim56Q80VI1 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trim56Q80VI1 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trim56Q80VI1 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC22.54■■□□□ 1.2
Trim56Q80VI1 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC22.54■■□□□ 1.2
Trim56Q80VI1 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trim56Q80VI1 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trim56Q80VI1 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Trim56Q80VI1 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trim56Q80VI1 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trim56Q80VI1 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Trim56Q80VI1 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trim56Q80VI1 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trim56Q80VI1 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trim56Q80VI1 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trim56Q80VI1 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC22.52■■□□□ 1.2
Trim56Q80VI1 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
Trim56Q80VI1 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trim56Q80VI1 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
Trim56Q80VI1 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
Trim56Q80VI1 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trim56Q80VI1 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trim56Q80VI1 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC22.51■■□□□ 1.19
Trim56Q80VI1 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Trim56Q80VI1 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Trim56Q80VI1 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
Trim56Q80VI1 Gm5540-201ENSMUST00000131852 1848 ntBASIC22.51■■□□□ 1.19
Trim56Q80VI1 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trim56Q80VI1 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trim56Q80VI1 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trim56Q80VI1 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trim56Q80VI1 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trim56Q80VI1 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trim56Q80VI1 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Trim56Q80VI1 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC22.5■■□□□ 1.19
Trim56Q80VI1 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trim56Q80VI1 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trim56Q80VI1 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
Trim56Q80VI1 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trim56Q80VI1 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Trim56Q80VI1 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trim56Q80VI1 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trim56Q80VI1 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trim56Q80VI1 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trim56Q80VI1 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trim56Q80VI1 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trim56Q80VI1 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trim56Q80VI1 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Trim56Q80VI1 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
Trim56Q80VI1 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trim56Q80VI1 Gm18688-201ENSMUST00000204695 1859 ntBASIC22.49■■□□□ 1.19
Trim56Q80VI1 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trim56Q80VI1 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Trim56Q80VI1 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC22.48■■□□□ 1.19
Trim56Q80VI1 Gm6420-201ENSMUST00000193885 723 ntBASIC22.48■■□□□ 1.19
Trim56Q80VI1 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Trim56Q80VI1 AC124603.1-201ENSMUST00000223843 308 ntBASIC22.48■■□□□ 1.19
Trim56Q80VI1 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Trim56Q80VI1 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Trim56Q80VI1 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC22.48■■□□□ 1.19
Trim56Q80VI1 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Trim56Q80VI1 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Trim56Q80VI1 AC124392.1-201ENSMUST00000225172 5324 ntBASIC22.48■■□□□ 1.19
Trim56Q80VI1 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC22.47■■□□□ 1.19
Trim56Q80VI1 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Trim56Q80VI1 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Trim56Q80VI1 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Trim56Q80VI1 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Trim56Q80VI1 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC22.47■■□□□ 1.19
Trim56Q80VI1 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms