Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC40Q4G0X9 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 OR7E47P-201ENST00000546390 1422 ntBASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 AC010542.4-201ENST00000563151 1910 ntBASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 AC010141.3-201ENST00000456659 717 ntBASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC40Q4G0X9 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC40Q4G0X9 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC40Q4G0X9 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.66■■□□□ 1.38
CCDC40Q4G0X9 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC23.66■■□□□ 1.38
CCDC40Q4G0X9 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC23.66■■□□□ 1.38
CCDC40Q4G0X9 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC40Q4G0X9 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC40Q4G0X9 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 SLC47A1P1-202ENST00000449666 945 ntBASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC23.65■■□□□ 1.38
CCDC40Q4G0X9 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.38
CCDC40Q4G0X9 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
CCDC40Q4G0X9 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CCDC40Q4G0X9 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.64■■□□□ 1.38
CCDC40Q4G0X9 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CCDC40Q4G0X9 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
CCDC40Q4G0X9 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.64■■□□□ 1.37
CCDC40Q4G0X9 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.64■■□□□ 1.37
CCDC40Q4G0X9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC23.64■■□□□ 1.37
CCDC40Q4G0X9 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC23.64■■□□□ 1.37
CCDC40Q4G0X9 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.64■■□□□ 1.37
CCDC40Q4G0X9 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CCDC40Q4G0X9 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC40Q4G0X9 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC40Q4G0X9 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC40Q4G0X9 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC40Q4G0X9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC40Q4G0X9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
CCDC40Q4G0X9 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC40Q4G0X9 AC007375.3-201ENST00000600936 2314 ntBASIC23.63■■□□□ 1.37
CCDC40Q4G0X9 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
CCDC40Q4G0X9 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC40Q4G0X9 AL024507.2-201ENST00000606070 2574 ntBASIC23.62■■□□□ 1.37
CCDC40Q4G0X9 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC40Q4G0X9 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC40Q4G0X9 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
CCDC40Q4G0X9 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
CCDC40Q4G0X9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC40Q4G0X9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.62■■□□□ 1.37
CCDC40Q4G0X9 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC40Q4G0X9 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC40Q4G0X9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC40Q4G0X9 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC40Q4G0X9 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC40Q4G0X9 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC23.61■■□□□ 1.37
CCDC40Q4G0X9 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC40Q4G0X9 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC23.61■■□□□ 1.37
CCDC40Q4G0X9 OXCT2P1-201ENST00000447263 1535 ntBASIC23.6■■□□□ 1.37
CCDC40Q4G0X9 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC23.6■■□□□ 1.37
CCDC40Q4G0X9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.6■■□□□ 1.37
CCDC40Q4G0X9 UNC93B3-201ENST00000308076 687 ntBASIC23.6■■□□□ 1.37
CCDC40Q4G0X9 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC40Q4G0X9 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC23.6■■□□□ 1.37
CCDC40Q4G0X9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.6■■□□□ 1.37
CCDC40Q4G0X9 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC40Q4G0X9 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC40Q4G0X9 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC40Q4G0X9 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms